Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_N19
         (775 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    23   2.7  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    23   3.6  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   4.7  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    22   6.3  

>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 365 SLRRSPAKAGGRPPVLVITLTSAQLRNVSDLP 460
           SL R   KAG   PV++ T T  Q   + +LP
Sbjct: 406 SLTRLYKKAGKEIPVILWTSTLTQKEYLENLP 437


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 189 SRELRGSWEGTGDSWS 236
           S +LRG+W G  DS S
Sbjct: 213 SYDLRGNWAGFADSHS 228


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -1

Query: 70  LLNRPRQRGTL 38
           +L +PRQRGTL
Sbjct: 450 ILEKPRQRGTL 460


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 195 ELRGSWEGTGDSWSG 239
           +LRGSW+G     SG
Sbjct: 208 DLRGSWDGVTGHHSG 222


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,348
Number of Sequences: 336
Number of extensions: 3739
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)