Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_N19
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    29   0.74 
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    27   2.3  
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy...    27   2.3  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    26   5.2  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    26   5.2  

>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +1

Query: 598  VQRYQEPVFSGFRNVKGISVEXLLSRFLFRVVVWTQLHHERSQVISCQLXFNLDFLA 768
            +  +Q  + SGF +   IS+  +   F+   +VW  L+     V S  L F +  LA
Sbjct: 958  ISSFQLSLLSGFEDNNQISLYVITGVFILSTIVWWGLYRNLPSVHSLSLPFAVYALA 1014


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 201 EALCSCPQVCEAVGEYEGREGADVYCMDLCIVY 103
           E + +  ++ E  G+ EG    DV C+DL + Y
Sbjct: 643 EVIRALRRIIEIKGKDEGERAVDVQCLDLVVNY 675


>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 658 RQISPLRFGNQRRQVPDTFGHGEERGIQVQSAAAALCNLHAMCST 524
           R I+   +GN +R + D F +G+E   Q+   AAA+  +    +T
Sbjct: 137 RSINFFSYGNGKRILADLFNNGQENS-QIHLMAAAIAGVITSAAT 180


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 348 YYRDLNMPKSIYPLVVRDQVCVPSYGFRNLPGMLS 244
           + RDLN+ +S+ P+       +PS  F NLP + S
Sbjct: 850 FKRDLNVQRSLSPIQNAGSAMLPS--FSNLPNLYS 882


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -2

Query: 390 AFAGDLRRDYPFLLYYRDLNMPKSIYPLVVRDQVCVPSYGFRNLPGML 247
           AF G+L   YP   Y+++ ++   + P++    +CV  Y   ++P  L
Sbjct: 615 AFTGNL--GYPIFKYFQNNSLQHLLVPVLGLASICVFGYVIYDIPRAL 660


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,893,999
Number of Sequences: 5004
Number of extensions: 60057
Number of successful extensions: 213
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)