Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_N19
         (775 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        27   0.26 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        27   0.26 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        27   0.26 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.5  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 198 ALCSCPQVCEAVGEYEGREGA 136
           ALC  P+VC+    Y G EGA
Sbjct: 220 ALCEKPEVCDYPDIYSGYEGA 240


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 198 ALCSCPQVCEAVGEYEGREGA 136
           ALC  P+VC+    Y G EGA
Sbjct: 220 ALCEKPEVCDYPDIYSGYEGA 240


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 198 ALCSCPQVCEAVGEYEGREGA 136
           ALC  P+VC+    Y G EGA
Sbjct: 220 ALCEKPEVCDYPDIYSGYEGA 240


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = +1

Query: 577 EYLFLRRVQRYQEPVFSGFRNVKGISVE 660
           E +  RR ++YQ+ ++SG R+ + ++ +
Sbjct: 39  ELMGRRRWKQYQDTLYSGTRSSESLTAQ 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,252
Number of Sequences: 438
Number of extensions: 4417
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)