Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_N18
(855 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 37 0.003
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 33 0.039
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 32 0.090
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 32 0.12
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 30 0.48
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.5
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c... 28 1.5
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.9
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 27 3.4
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual 27 4.5
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 26 7.8
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 37.1 bits (82), Expect = 0.003
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Frame = +1
Query: 187 SHYLSASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCPKC----CSKVSFKCRVGSR 354
S+++++SS+T S+ +++ SS S SS K SSS S S K S
Sbjct: 144 SYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSS 203
Query: 355 HWSRTLGSRPSSRVQSKFRKCSLVASRPPLSCSA 456
S++ S SS+ SKF S + S P S S+
Sbjct: 204 SSSKSSASPSSSKSSSKFSSSSFITSTTPASSSS 237
Score = 26.2 bits (55), Expect = 5.9
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Frame = +1
Query: 205 SSTTISTGLCPTNT---FLRISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSRHWSRTLG 375
SST+I+ + T T + SS + SS SSS P S S S S +
Sbjct: 128 SSTSIAPSMIGTRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSK 187
Query: 376 SRPSSRVQSKFRKCSLVASRPPLSCSA 456
S SS SK S +S+ S S+
Sbjct: 188 SSSSSSSSSKSSSSSSSSSKSSASPSS 214
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 33.5 bits (73), Expect = 0.039
Identities = 28/91 (30%), Positives = 45/91 (49%)
Frame = +1
Query: 199 SASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSRHWSRTLGS 378
S+S TTIS+G+ ++ I S +S S LSSS + +S S +S S
Sbjct: 554 SSSITTISSGISSSS----IPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTS 609
Query: 379 RPSSRVQSKFRKCSLVASRPPLSCSAMVLTT 471
PSS + S S + S P S S++++++
Sbjct: 610 SPSS-ISSSISSSSTILSSPTPSTSSLMISS 639
Score = 25.8 bits (54), Expect = 7.8
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Frame = +1
Query: 187 SHYLSASSTTI--STGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSRHW 360
S +S+ T++ S+ PT++ SS + S +SSS P S VS +
Sbjct: 528 SSIISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSP 587
Query: 361 SRTLGSRPSSRVQSKFRKCSLVASRPPLSCSAMVLTTL 474
S T S SS S F S +S +S S +T+
Sbjct: 588 SSTSLSISSSSTSSTFSSAS-TSSPSSISSSISSSSTI 624
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 32.3 bits (70), Expect = 0.090
Identities = 39/151 (25%), Positives = 62/151 (41%), Gaps = 2/151 (1%)
Frame = +1
Query: 187 SHYLSASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSRHWSR 366
S L++SST +T PT++ L SS S S S++ S ++ S S
Sbjct: 88 SSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSS 147
Query: 367 TL--GSRPSSRVQSKFRKCSLVASRPPLSCSAMVLTTLCWMNCSLASLYWLARYLMRKAA 540
+L S SS + S S ++ P S ++ L++ N + +S LA +
Sbjct: 148 SLASSSTTSSSLASSSTN-STTSATPTSSATSSSLSSTAASNSATSSS--LASSSLNSTT 204
Query: 541 LVLAEGSSCASAAPNAPHPPRXTASDTRAST 633
A SS +S A + AS + ST
Sbjct: 205 SATATSSSLSSTAASNSATSSSLASSSLNST 235
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 31.9 bits (69), Expect = 0.12
Identities = 26/68 (38%), Positives = 34/68 (50%)
Frame = +1
Query: 175 H*DPSHYLSASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSR 354
H SH S SS+ +T PTNT S+ + S+ SSSG P +K S ++GS
Sbjct: 3722 HNTVSHATSTSSS-FTTSHLPTNTLA--STFDNSQSIFSSSSGVPGLSTKSSSLGKIGSS 3778
Query: 355 HWSRTLGS 378
S TL S
Sbjct: 3779 SISLTLSS 3786
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 29.9 bits (64), Expect = 0.48
Identities = 27/85 (31%), Positives = 36/85 (42%)
Frame = +1
Query: 136 TLSPRHKNISEHFH*DPSHYLSASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCPKC 315
T SP + S S S+SS++ S+ +++ SS S SS SSS P
Sbjct: 152 TTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPIT 211
Query: 316 CSKVSFKCRVGSRHWSRTLGSRPSS 390
S S S S + SRPSS
Sbjct: 212 SSTSSSHSSSSSSSSSSSSSSRPSS 236
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.3 bits (60), Expect = 1.5
Identities = 31/106 (29%), Positives = 46/106 (43%)
Frame = +1
Query: 184 PSHYLSASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSRHWS 363
P+ S S++ S+ PT+T ISS S SS S+ S SF S S
Sbjct: 283 PTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSS--S 340
Query: 364 RTLGSRPSSRVQSKFRKCSLVASRPPLSCSAMVLTTLCWMNCSLAS 501
T+ S SS S F + +S+ S S+ V ++ + +L S
Sbjct: 341 STISSSSSSPSSSSF-SSTTSSSKSSSSFSSTVSSSSSTSSSTLTS 385
>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 579
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 700 FRQSEQGEAXVKCLYALSCGCREYSPACRSL 608
F ++E+ E +KCL L YSP R+L
Sbjct: 91 FSETEKSECFIKCLLLLILSLGNYSPYSRNL 121
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 27.9 bits (59), Expect = 1.9
Identities = 26/85 (30%), Positives = 38/85 (44%)
Frame = +1
Query: 157 NISEHFH*DPSHYLSASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFK 336
NI E S S+SS+ +S+ +++ ++ S SS SSS K S S
Sbjct: 109 NIVEGAASSSSSSSSSSSSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSSSS-- 166
Query: 337 CRVGSRHWSRTLGSRPSSRVQSKFR 411
+ SR SRT R +S S +R
Sbjct: 167 -KSSSRSSSRTTSHRTTSHKSSSYR 190
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 283 RKKRSIVKRSSGRCLSGISQWRSWLKKPIDSARG 182
R++RS+V + + C+S + WLKK A+G
Sbjct: 97 RRRRSVVSKEALSCISLEIPYIKWLKKRKGHAKG 130
>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 529 RKAALVLAEGSSCASAAPNAPHPPRXTAS 615
RK V +EG S A+A NA H P T +
Sbjct: 114 RKIRCVYSEGPSTANAHANAHHQPAQTTT 142
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -2
Query: 362 DQCRDPTLHLKETLEQHLGHPELESFTEEKEY 267
D RD +L + L H HPE E KEY
Sbjct: 106 DLIRDYVDYLLDKLSFHAQHPEFNGTFEYKEY 137
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,980
Number of Sequences: 5004
Number of extensions: 50582
Number of successful extensions: 160
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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