Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_N18
(855 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0706 + 27419215-27419371,27419521-27419734,27419818-274199... 31 1.2
01_04_0068 + 15693131-15693533,15693604-15693803,15693879-156941... 30 2.0
07_01_0054 - 417945-418157 30 2.7
11_04_0167 + 14382976-14385244,14389373-14389842 29 3.6
11_03_0187 - 11334733-11334802,11334975-11335055,11336087-113361... 29 6.2
09_02_0614 - 11249705-11249780,11249943-11250011,11251138-11251457 29 6.2
06_03_0489 - 21373236-21373311,21373474-21373542,21374468-21374988 29 6.2
06_02_0142 + 12261680-12261999,12263126-12263194,12263357-12263432 29 6.2
02_04_0119 + 19926766-19927085,19928212-19928280,19928751-199287... 29 6.2
07_03_0142 - 14251959-14252230,14252244-14252316 28 8.3
05_03_0480 - 14534133-14534759,14535184-14535405 28 8.3
>04_04_0706 + 27419215-27419371,27419521-27419734,27419818-27419913,
27420006-27420123,27420211-27420384,27420633-27420803,
27420932-27420987,27421125-27421214,27421296-27421444,
27421640-27421722,27421830-27421958,27422063-27422137,
27422248-27422416,27422965-27423104,27423191-27423298,
27423603-27423783,27424445-27424542,27424639-27424728,
27424881-27425034,27425376-27425431,27425483-27425533,
27425651-27425732,27425821-27425995,27426748-27426823,
27426951-27427121,27427198-27427269,27427350-27427454,
27427948-27428037,27428703-27428908,27428989-27429190,
27429294-27429473,27429858-27429925,27430005-27430341,
27430428-27430637,27430765-27431448,27431537-27431940,
27432495-27432542,27432777-27433023,27433381-27433602,
27433796-27434026
Length = 2122
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -3
Query: 292 KVLRKKRSIVKRSSGRCLSGISQWRSWLKKPIDSARGLNESVPKYSCAVDSVFPP 128
++L RS+VKR + L ++ S ++K AR LN S P + VD P
Sbjct: 1499 RMLEHSRSVVKRKALGILCETAKGNSLIQKKQKKARKLNHSTPATALQVDKSSAP 1553
>01_04_0068 +
15693131-15693533,15693604-15693803,15693879-15694162,
15694251-15694428
Length = 354
Score = 30.3 bits (65), Expect = 2.0
Identities = 21/62 (33%), Positives = 29/62 (46%)
Frame = +1
Query: 145 PRHKNISEHFH*DPSHYLSASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSK 324
PRH +++ H P S S TIS+G T++ S + SS +SSS S
Sbjct: 50 PRHYTVAQAVH-HPPWATSGVSCTISSGSSATSSCTISSGSSATSSCTISSSSSGSSTST 108
Query: 325 VS 330
VS
Sbjct: 109 VS 110
>07_01_0054 - 417945-418157
Length = 70
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +1
Query: 487 CSLASLYWLARYLMRKAALVLAEGSSCASAAPNAPHP 597
CS+ S W R L K AEG S PN P P
Sbjct: 9 CSVKSKTWNERKLCTKRGTCRAEGFDYGSCYPNRPRP 45
>11_04_0167 + 14382976-14385244,14389373-14389842
Length = 912
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 420 TGRVTTPSQLFSYGPDYIVLDELLFSVAVLAGQVPDEE 533
TG+VTT +++YG ++L E++ VL +PD+E
Sbjct: 758 TGKVTTKVDVYAYG---VILMEMITGRKVLDDSLPDDE 792
>11_03_0187 -
11334733-11334802,11334975-11335055,11336087-11336155,
11337282-11337601
Length = 179
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = -2
Query: 389 LEGLDPRVLDQCRDPTLHLKETLEQHLGHPEL--ESFTEEKEYCEEILRKVFVGHKPVEI 216
+EGL D P H+K E+ H +L + F+E Y +I R+ F +P+ +
Sbjct: 41 IEGLQNEASDHRHHPRKHIKRPREE--AHQQLVNDYFSENPLYPSKIFRRRFRMSRPLFL 98
Query: 215 VVEEA 201
+ EA
Sbjct: 99 RIVEA 103
>09_02_0614 - 11249705-11249780,11249943-11250011,11251138-11251457
Length = 154
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = -2
Query: 389 LEGLDPRVLDQCRDPTLHLKETLEQHLGHPEL--ESFTEEKEYCEEILRKVFVGHKPVEI 216
+EGL D P H+K E+ H +L + F+E Y +I R+ F +P+ +
Sbjct: 41 IEGLQNEASDHRHHPRKHIKRPREE--AHQQLVNDYFSENPLYPSKIFRRRFRMSRPLFL 98
Query: 215 VVEEA 201
+ EA
Sbjct: 99 RIVEA 103
>06_03_0489 - 21373236-21373311,21373474-21373542,21374468-21374988
Length = 221
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = -2
Query: 389 LEGLDPRVLDQCRDPTLHLKETLEQHLGHPEL--ESFTEEKEYCEEILRKVFVGHKPVEI 216
+EGL D P H+K E+ H +L + F+E Y +I R+ F +P+ +
Sbjct: 41 IEGLQNEASDHRHHPRKHIKRPREE--AHQQLVNDYFSENPLYPSKIFRRRFRMSRPLFL 98
Query: 215 VVEEA 201
+ EA
Sbjct: 99 RIVEA 103
>06_02_0142 + 12261680-12261999,12263126-12263194,12263357-12263432
Length = 154
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = -2
Query: 389 LEGLDPRVLDQCRDPTLHLKETLEQHLGHPEL--ESFTEEKEYCEEILRKVFVGHKPVEI 216
+EGL D P H+K E+ H +L + F+E Y +I R+ F +P+ +
Sbjct: 41 IEGLQNEASDHRHHPRKHIKRPREE--AHQQLVNDYFSENPLYPSKIFRRRFRMSRPLFL 98
Query: 215 VVEEA 201
+ EA
Sbjct: 99 RIVEA 103
>02_04_0119 +
19926766-19927085,19928212-19928280,19928751-19928772,
19928817-19928933
Length = 175
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = -2
Query: 389 LEGLDPRVLDQCRDPTLHLKETLEQHLGHPEL--ESFTEEKEYCEEILRKVFVGHKPVEI 216
+EGL D P H+K E+ H +L + F+E Y +I R+ F +P+ +
Sbjct: 41 IEGLQNEASDHRHHPRKHIKRPREE--AHQQLVNDYFSENPLYPSKIFRRRFRMSRPLFL 98
Query: 215 VVEEA 201
+ EA
Sbjct: 99 RIVEA 103
>07_03_0142 - 14251959-14252230,14252244-14252316
Length = 114
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 304 TLSW-KVLRKKRSIVKRSSGRCLSGISQWR 218
+L W ++ ++R + +R SGRC G+ WR
Sbjct: 6 SLRWMRMAGRRRWLKRRRSGRCRRGLRSWR 35
>05_03_0480 - 14534133-14534759,14535184-14535405
Length = 282
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Frame = +1
Query: 316 CSKVSFKCRVGSRHWSRTLGS---------RPSSRVQSKFRKCSLVASRPP 441
CS+++++C G R + LG +PS +VQ + SL+ PP
Sbjct: 88 CSRITYRCHSGLRRKAVVLGEKEVVQAPDRKPSEKVQERVHLVSLLRGLPP 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,869,894
Number of Sequences: 37544
Number of extensions: 364750
Number of successful extensions: 1297
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -