Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_N18
(855 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9053| Best HMM Match : TIG (HMM E-Value=0) 33 0.39
SB_6590| Best HMM Match : Borrelia_orfA (HMM E-Value=0.33) 31 1.6
SB_35860| Best HMM Match : Sugar_tr (HMM E-Value=1e-04) 30 2.8
SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_47326| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_18197| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 29 6.4
SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.4
SB_51081| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_7976| Best HMM Match : ShTK (HMM E-Value=0.001) 28 8.4
>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
Length = 2990
Score = 32.7 bits (71), Expect = 0.39
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 199 SASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCP-KCCSKVSFKCRVGS 351
S S T IS G T T S+ S +SV + S+ C CS+ KC VGS
Sbjct: 658 SVSPTNISAGNELTLTGTGFSTDCSKNSVLIGSTNCSVTTCSETEIKCTVGS 709
>SB_6590| Best HMM Match : Borrelia_orfA (HMM E-Value=0.33)
Length = 479
Score = 30.7 bits (66), Expect = 1.6
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = -2
Query: 524 RYLASQYSDAKEQFIQHNVVRTIAEQLR 441
R +QY++ K++++QHN+ T A+QLR
Sbjct: 78 RVSTTQYNNCKQEYLQHNIYNT-AQQLR 104
>SB_35860| Best HMM Match : Sugar_tr (HMM E-Value=1e-04)
Length = 544
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = +1
Query: 328 SFKCRVGSRHWSRTLGSRPSSRVQSKFRKCSLVASRPPLSCSAMVLTTLCWMNCSLASLY 507
++KCR GS + T +P+ + K +CS+ S + + T + C +SL
Sbjct: 34 AWKCRNGSTICNLTKEFQPTDKDPDKMLRCSIPRSEWEFTTPYTSIVTEWDLVCEYSSLS 93
Query: 508 WLARYLM 528
W +M
Sbjct: 94 WATNSIM 100
>SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2391
Score = 29.5 bits (63), Expect = 3.6
Identities = 26/85 (30%), Positives = 37/85 (43%)
Frame = +1
Query: 247 FLRISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSRHWSRTLGSRPSSRVQSKFRKCSLV 426
F+R S + FSS ++S S S S + R W R G SS V V
Sbjct: 795 FMRSLSGFRFSSSRVSRSSSSISDSLSSLRSRAS---WRRLSGVLESSMVSLS------V 845
Query: 427 ASRPPLSCSAMVLTTLCWMNCSLAS 501
A+ P CS+ L+ WM S+++
Sbjct: 846 ATTP---CSSWTLSVFSWMTASISA 867
>SB_47326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 535 AALVLAEGSSCASAAPNAPHP 597
A +V A G +C AA NAPHP
Sbjct: 38 ACVVNASGPACGLAAANAPHP 58
>SB_18197| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1153
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = -3
Query: 301 LSWKVLRKKRSIVKRSSGRCLSGISQWRSWLKKPIDSARGLNES 170
+S + RK + I++ + +C+ ++ W+ LK +D +N S
Sbjct: 318 MSSYLARKYKRILRSNGKKCVRKVTSWKQTLKTAVDRRYAINPS 361
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 28.7 bits (61), Expect = 6.4
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 17/108 (15%)
Frame = -2
Query: 470 VVRTIAEQLRGGRDATS---EHFLNLLCTLLEGL----DPRVLDQCRDPTLHLKETLE-Q 315
VV T + GG D EHF+ L +G D R + + R K L Q
Sbjct: 916 VVATNGDTHLGGEDFDQNVMEHFIKLY-KKKKGKNIRKDNRAVQKLRREVEKAKRALSTQ 974
Query: 314 HLGHPELESFTEEKEYCEEILR--------KVFVGH-KPVEIVVEEAD 198
H E+ESF E +++ E + R K+F KPV+ V+E+AD
Sbjct: 975 HQARVEIESFFEGEDFSEMLTRARFEELNAKLFKSTLKPVQKVLEDAD 1022
>SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2937
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 193 YLSASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGC 306
Y+ S + TG+ TNTFL S + + +L SSGC
Sbjct: 2055 YILQSLSPYITGVTDTNTFLFDSCNQTSCNQELPSSGC 2092
>SB_51081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 28.3 bits (60), Expect = 8.4
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -3
Query: 292 KVLRKKRSIVKRSSGRCLSGISQWRSWLKKPIDSARGLNESVP 164
K+L K ++ S ++QW +WL++ DS R + +P
Sbjct: 46 KILNNKALPLETKIRLYNSALNQWLNWLQQAKDSGRSYTKHIP 88
>SB_7976| Best HMM Match : ShTK (HMM E-Value=0.001)
Length = 277
Score = 28.3 bits (60), Expect = 8.4
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 220 STGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKC 339
S LCP R++++ S + +S G ++VSF C
Sbjct: 78 SCNLCPERDSKRLAARVSIDFISVSRKGLKTKAARVSFDC 117
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,244,387
Number of Sequences: 59808
Number of extensions: 395953
Number of successful extensions: 1180
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -