Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_N18
         (855 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61370.1 68418.m07700 pentatricopeptide (PPR) repeat-containi...    31   1.3  
At2g31320.1 68415.m03824 poly [ADP-ribose] polymerase, putative ...    30   1.7  
At3g08670.1 68416.m01007 expressed protein                             29   3.0  
At2g11830.1 68415.m01271 hypothetical protein                          29   5.2  
At2g43270.1 68415.m05378 F-box family protein contains Pfam PF00...    28   6.9  
At2g39740.1 68415.m04880 expressed protein                             28   6.9  
At3g23750.1 68416.m02986 leucine-rich repeat family protein / pr...    28   9.1  
At3g05720.1 68416.m00640 importin alpha-1 subunit, putative simi...    28   9.1  

>At5g61370.1 68418.m07700 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 487

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = -2

Query: 545 TKAAFLIRYLASQYSDAKEQFIQHNVVRTIAEQLRGGRDATSEHFLNLLCTLLEGLDPRV 366
           T  A L RY  S +   + +   H V+R ++  + GG D   E+   +  +    L  +V
Sbjct: 15  TSTAKLTRYFCSHHLVDRSETALHEVIRIVSSPV-GGLDDLEENLNQVSVSPSSNLVTQV 73

Query: 365 LDQCRDPT 342
           ++ C++ T
Sbjct: 74  IESCKNET 81


>At2g31320.1 68415.m03824 poly [ADP-ribose] polymerase, putative /
           NAD(+) ADP-ribosyltransferase, putative /
           poly[ADP-ribose] synthetase, putative similar to
           poly(ADP)-ribose polymerase [Zea mays] GI:3928871 ;
           contains Pfam profiles PF00644: Poly(ADP-ribose)
           polymerase catalytic domain, PF00645: Poly(ADP-ribose)
           polymerase and DNA-Ligase Zn-finger region, PF02877:
           Poly(ADP-ribose) polymerase, regulatory domain, PF00533:
           BRCA1 C Terminus (BRCT) domain
          Length = 983

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 199 SASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSKV 327
           + S+T+ STG   ++T      +Y     + S +GC KC  K+
Sbjct: 91  AGSNTSTSTGTSTSSTANNAKLEYGIEVSQTSRAGCRKCSEKI 133


>At3g08670.1 68416.m01007 expressed protein 
          Length = 567

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
 Frame = +1

Query: 184 PSHYLSASSTTISTGLCPTNTFLRISSQYSFSS-VKLSSSGCPKCCSKVSFKCRVGSRHW 360
           PS  L+ SS ++S+ + P++   R SS    S+  + SS+      S++       S   
Sbjct: 176 PSSILNTSSASVSSYIRPSSPSSRSSSSARPSTPTRTSSASRSSTPSRIRPGSSSSSMDK 235

Query: 361 SR-TLGSRPS---SRVQSKFRKCSLVASRP 438
           +R +L SRPS   SR Q      +++ASRP
Sbjct: 236 ARPSLSSRPSTPTSRPQLSASSPNIIASRP 265


>At2g11830.1 68415.m01271 hypothetical protein
          Length = 156

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 278 EKEYCEEILRKVFVGH-KPVEIVVEE 204
           E E C  +L++VF+ H KPV IV ++
Sbjct: 24  ETEKCVVVLKRVFINHYKPVRIVTQD 49


>At2g43270.1 68415.m05378 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 387

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +1

Query: 370 LGSRPSSRVQSKFRKCSLVASRPPLSCSAMV-LTTLCWMNCSLASLYWLARY 522
           LG      +Q  +  C + A+RP L+C  +V +    W+N    S   L R+
Sbjct: 62  LGFEGEEEIQMVYLHCDIDATRPSLTCEGLVCIPAPGWINVLNPSTRQLRRF 113


>At2g39740.1 68415.m04880 expressed protein
          Length = 474

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 238 SGISQWRSWLKKPIDSARGLNESVPKYSCAVDSVFPPNLV 119
           +G SQ +  + KP     G+N + P Y+  V+S  PP+ +
Sbjct: 421 AGSSQNQGHIGKPSGHMNGVNSARPAYTNGVNSARPPSKI 460


>At3g23750.1 68416.m02986 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 928

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 420 TGRVTTPSQLFSYGPDYIVLDELLFSVAVLAGQVPDE 530
           TGRVTT   ++++G   +VL E+L     L   +PDE
Sbjct: 757 TGRVTTKVDVYAFG---VVLMEILTGRKALDDSLPDE 790


>At3g05720.1 68416.m00640 importin alpha-1 subunit, putative similar
           to importin alpha subunit (Karyopherin alpha subunit)
           (KAP alpha) SP:O22478 from [Lycopersicon esculentum]
          Length = 528

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 22/75 (29%), Positives = 31/75 (41%)
 Frame = -2

Query: 563 DEPSARTKAAFLIRYLASQYSDAKEQFIQHNVVRTIAEQLRGGRDATSEHFLNLLCTLLE 384
           D P  + +AA+ +  +AS  S+  E  I H  V  +   L    D   E  +  L   + 
Sbjct: 116 DSPQLQFEAAWALTNIASGTSENTEVVIDHGAVAILVRLLNSPYDVVREQVVWALGN-IS 174

Query: 383 GLDPRVLDQCRDPTL 339
           G  PR    CRD  L
Sbjct: 175 GDSPR----CRDIVL 185


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,614,248
Number of Sequences: 28952
Number of extensions: 277580
Number of successful extensions: 881
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)