Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_N16
         (781 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7153| Best HMM Match : 6PF2K (HMM E-Value=1.9e-25)                  29   4.2  
SB_28447| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)                28   9.8  

>SB_7153| Best HMM Match : 6PF2K (HMM E-Value=1.9e-25)
          Length = 301

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
 Frame = -2

Query: 690 GSSKLVRFFEKQDHCLKALDRACRV-----ITAWLDQGAKSYEMK 571
           G  KL  FF+  +   +A+ R C +     +++WLD+G ++ E+K
Sbjct: 82  GMDKLHDFFKVDNQEAQAIRRQCAIDCLNDVSSWLDEGVQAAEVK 126


>SB_28447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 777

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 468 HRVTRPVLVPHRIHHLHHQIRV 403
           HRVTRPV+V  R + ++H + V
Sbjct: 478 HRVTRPVMVEWRANPIYHLLNV 499


>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
          Length = 237

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 477 HHRHRVTRPVLVPHRIHHLHH 415
           HH H ++  ++  HR HH HH
Sbjct: 156 HHHHPLSIAIIHRHRHHHHHH 176


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,746,933
Number of Sequences: 59808
Number of extensions: 291147
Number of successful extensions: 1016
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)