Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_N16
         (781 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44740.2 68418.m05484 UMUC-like DNA repair family protein low...    34   0.092
At5g44740.1 68418.m05483 UMUC-like DNA repair family protein low...    34   0.092
At5g03150.1 68418.m00263 zinc finger (C2H2 type) family protein ...    31   0.86 
At5g59510.1 68418.m07458 expressed protein                             28   8.0  
At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger) fa...    28   8.0  
At1g29220.1 68414.m03574 transcriptional regulator family protei...    28   8.0  

>At5g44740.2 68418.m05484 UMUC-like DNA repair family protein low
           similarity to DNA polymerase eta [Homo sapiens]
           GI:11463971; contains Pfam profile PF00817:
           ImpB/MucB/SamB family
          Length = 672

 Score = 34.3 bits (75), Expect = 0.092
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -1

Query: 250 YQPPVQTADDIAAQPPPRSQADIDYELKVRKFLEMTKED-SDYEEKVRNFLAETTQYKRN 74
           Y      A+ + A  PP S   ID E+     L M +ED  D++E VRN++      +R+
Sbjct: 123 YLDLTDAAESMLADAPPESLELIDEEVLKSHILGMNREDGDDFKESVRNWICREDADRRD 182

Query: 73  R 71
           +
Sbjct: 183 K 183


>At5g44740.1 68418.m05483 UMUC-like DNA repair family protein low
           similarity to DNA polymerase eta [Homo sapiens]
           GI:11463971; contains Pfam profile PF00817:
           ImpB/MucB/SamB family
          Length = 588

 Score = 34.3 bits (75), Expect = 0.092
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -1

Query: 250 YQPPVQTADDIAAQPPPRSQADIDYELKVRKFLEMTKED-SDYEEKVRNFLAETTQYKRN 74
           Y      A+ + A  PP S   ID E+     L M +ED  D++E VRN++      +R+
Sbjct: 39  YLDLTDAAESMLADAPPESLELIDEEVLKSHILGMNREDGDDFKESVRNWICREDADRRD 98

Query: 73  R 71
           +
Sbjct: 99  K 99


>At5g03150.1 68418.m00263 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 503

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = -1

Query: 340 LSPLSKRMAMLGDGDSTSRTHNSQFNHPYGYQPPVQTADDIAAQPPPRSQADIDYELKVR 161
           LSP+S   A+L        T ++    P  +  P  T+    A PPPRS + +  + ++ 
Sbjct: 366 LSPMSAT-ALLQKAAQMGSTRSNSSTAPSFFAGPTMTSSSATASPPPRSSSPMMIQQQLN 424

Query: 160 KF 155
            F
Sbjct: 425 NF 426


>At5g59510.1 68418.m07458 expressed protein
          Length = 144

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -2

Query: 162 ASSSR*PKKIQTMKKKFVTSSLKQRNTNVTARCKNLA 52
           + S++ P    +  K  ++ SL Q+  +VT +C+N+A
Sbjct: 81  SGSTKCPVDTSSTSKCSISRSLSQKGASVTRKCRNMA 117


>At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 378

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 286 RTHNSQFNHPYGYQPPVQTADDIAAQPPPRS 194
           R +N+  +HP+ + PP   +D    QPPP++
Sbjct: 10  RDNNNNHHHPH-HNPPYYYSDPPPQQPPPQN 39


>At1g29220.1 68414.m03574 transcriptional regulator family protein
           similar to Transcriptional regulator protein HCNGP
           (Swiss-Prot:Q02614) [Mus musculus]
          Length = 351

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 208 PPPRSQADIDYELKVRKFLEMTKEDSDYEEKVRN 107
           P PR +   + + K+ KFL + K    +  +VRN
Sbjct: 135 PRPRERCSEELQRKIDKFLSLKKMGKSFNSEVRN 168


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,552,911
Number of Sequences: 28952
Number of extensions: 197681
Number of successful extensions: 687
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)