Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_N14
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    26   7.2  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    25   9.5  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    25   9.5  
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    25   9.5  

>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 275 LQLAHSAPDLAKDTFSDAFASSVKDLLMVVTLAQL-IKTQLQLNEKLTLL 129
           LQL H     A++ F    ASS   L M   L  L + T+L  + KLT+L
Sbjct: 308 LQLLHDPQGFAEELFEKHLASSKSRLSMDQKLVVLRLLTRLVGSHKLTVL 357


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -2

Query: 516 HVHSCRCHSHM 484
           H+H CRCH+++
Sbjct: 69  HIHCCRCHTYI 79


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = -3

Query: 191 VVTLAQLIKTQLQ--LNEKLTLLTSQ*ILQYIREDLTSSFDSVSGCKHLINKY 39
           V TL QL++  L   ++EK++  +S+ I + I + +    +S+      +N+Y
Sbjct: 330 VSTLNQLLRLNLYHAMDEKISTFSSEHITKLIEQQIKPDLESMLIISEYLNEY 382


>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +3

Query: 429 STRHSLLAHL*TYNLRFIACESDI--YRSEHATLAFHLALPMVHKHMHVNPFDLQPAK 596
           ST HSLL+++ +   + IACE     YR +          P+ H    +N F  Q  K
Sbjct: 307 STIHSLLSYVFSRQTQNIACEPMYIDYRKDETEAIIRWKTPL-HAETCINAFRTQERK 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,522,756
Number of Sequences: 5004
Number of extensions: 44613
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)