Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_N14
         (802 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0034 - 228939-229028,229117-229230,229309-229430,229827-23...    33   0.26 
01_06_1089 - 34451982-34452670,34452755-34452814,34453287-344533...    29   4.3  
03_01_0341 + 2689367-2689619,2690520-2690782,2690865-2691033,269...    28   7.5  
07_03_1709 - 28873172-28873327,28873519-28873584,28874067-288741...    28   9.9  
06_01_0475 + 3375757-3375800,3375898-3376168,3376252-3376440,337...    28   9.9  
01_01_0134 - 1224084-1224269,1224578-1224662,1224763-1225050,122...    28   9.9  

>05_01_0034 -
           228939-229028,229117-229230,229309-229430,229827-230056,
           230458-230537,230641-230859
          Length = 284

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -2

Query: 702 IVGWGRLAMKLPTXPLYTXSXIPRECREPVHVTLDTSLAGGRMGLRAYV 556
           IVGW      +            RE + P+H+T+DT    G   ++AY+
Sbjct: 97  IVGWFSTGFGVSGGSTLIHDFYSREVQSPIHLTVDTGFTRGDASIKAYI 145



 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 260 SAPDLAKDTFSDAFASSVKDLLMVVTLAQLIKTQLQLNEKL 138
           S P L+   F   F   ++D L +V L+ + +TQ+ + EKL
Sbjct: 237 SMPKLSPAAFDKLFNDRIQDNLALVYLSSITRTQISIAEKL 277


>01_06_1089 -
           34451982-34452670,34452755-34452814,34453287-34453352,
           34454055-34454253,34454470-34454719,34454830-34454898,
           34455733-34455804,34456027-34456168,34456544-34457064,
           34457166-34457739,34459164-34459269
          Length = 915

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 638 FPVNAVSLSMLLWTLRWLEVEWVYVHMF 555
           FP   VSL  ++W + ++E  W Y H +
Sbjct: 629 FPYQFVSLFSVIWLISYIENVWTYGHRY 656


>03_01_0341 +
           2689367-2689619,2690520-2690782,2690865-2691033,
           2691129-2691218,2691658-2691950,2692037-2692261
          Length = 430

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +1

Query: 556 NICT*THSTSSQRSVQSNMDRLTAFTGNXTRCIQRXGG*LHCQSPPTNNXSEE 714
           ++ T T S +S+RSV S   R TAF      C     G    +SP T++ S++
Sbjct: 28  SVATTTESYNSERSVGSGGGRGTAFLDAFRSCF--VSGEAQARSPETSSLSDD 78


>07_03_1709 -
           28873172-28873327,28873519-28873584,28874067-28874127,
           28875406-28875462,28876301-28876531,28876685-28876799,
           28876897-28877136,28877222-28877316,28877406-28877585,
           28877663-28877839,28877920-28878890
          Length = 782

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 530 PFGTPNGTQTYARKPIRPPASEVSRVTWTG 619
           PF +P  +  +AR P  P  +E+S    TG
Sbjct: 602 PFASPTKSAGFARDPFAPTEAEISATASTG 631


>06_01_0475 +
           3375757-3375800,3375898-3376168,3376252-3376440,
           3376816-3376989,3378039-3378218,3378565-3378719,
           3379509-3379599,3380023-3380186,3380791-3380845,
           3380944-3381066,3381160-3381255,3381706-3381833,
           3382407-3382466,3382607-3382896,3383127-3383237,
           3383318-3383395,3383487-3383659,3384192-3384296,
           3385017-3385112
          Length = 860

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/66 (21%), Positives = 37/66 (56%)
 Frame = +1

Query: 37  LYLFMRCLQPDTESKLDVRSSLIYCSIHWEVNKVSFSLSWSWVLINCANVTTMSRSLTLE 216
           L + M+ ++ DT++    R++++ C    +V+    +L   ++L+N AN  ++++ L   
Sbjct: 342 LNMLMKAMEVDTQAVQRHRATILECVKDADVSIRKRALELVYLLVNDANAKSLTKELVDY 401

Query: 217 AKASEK 234
            + S++
Sbjct: 402 LEVSDQ 407


>01_01_0134 -
           1224084-1224269,1224578-1224662,1224763-1225050,
           1225114-1225334,1225511-1225642,1226218-1226494,
           1226722-1226770,1226993-1227088,1227779-1227911,
           1228241-1228391,1228484-1228674,1229167-1229382
          Length = 674

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/59 (22%), Positives = 26/59 (44%)
 Frame = +1

Query: 34  WLYLFMRCLQPDTESKLDVRSSLIYCSIHWEVNKVSFSLSWSWVLINCANVTTMSRSLT 210
           W+  F         +++ V S++I+ S+ W + K   S+     L+    + T   +LT
Sbjct: 369 WMQAFRDGPTNKVRARMSVASAIIFGSVFWRMGKTQTSIQDRMGLLQVTAINTAMAALT 427


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,450,663
Number of Sequences: 37544
Number of extensions: 328292
Number of successful extensions: 873
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)