Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_N14
         (802 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36852| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   8e-04
SB_42482| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   4.4  
SB_49641| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_4183| Best HMM Match : APH_6_hur (HMM E-Value=7.4)                  28   7.7  
SB_32625| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_32431| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_32430| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_36852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 20/50 (40%), Positives = 29/50 (58%)
 Frame = -3

Query: 278 LLQLAHSAPDLAKDTFSDAFASSVKDLLMVVTLAQLIKTQLQLNEKLTLL 129
           L    +S P +  + F     S+++DLLM+V L+ L KTQL L EKL  +
Sbjct: 117 LTSFVNSVPKMTAEEFEAMLNSNMQDLLMIVYLSSLCKTQLALGEKLNAI 166


>SB_42482| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 347

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 109 CSIHWEVNKVSFSLSWSWVLINCANVT 189
           CS+ W++N++SF + +  V +N   +T
Sbjct: 170 CSLIWDLNRISFVIVFIGVFVNSVTIT 196


>SB_49641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 755

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 589 GWRSNGFTCICLCTIGSAKWKAKVACSLL 503
           G +S   +CIC C  G  + K K+ C +L
Sbjct: 99  GGKSARTSCICRCVFGVIEIKRKIRCKML 127


>SB_4183| Best HMM Match : APH_6_hur (HMM E-Value=7.4)
          Length = 270

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 607 YSGHFAGWRSNGFTCICL 554
           ++GH   W SNG TC+ L
Sbjct: 201 FNGHTYSWHSNGVTCVLL 218


>SB_32625| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 181

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +1

Query: 115 IHWEVNKVSFS--LSWSWVLINCANVT 189
           IH+  N  SF   ++W W  IN AN+T
Sbjct: 77  IHYVANYNSFGRRIAWDWARINLANIT 103


>SB_32431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 616 CPCYSGHFAGWRSNGFTCIC 557
           CPC +G     + +GFTCIC
Sbjct: 130 CPCKNGGHCVNKVDGFTCIC 149


>SB_32430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 616 CPCYSGHFAGWRSNGFTCIC 557
           CPC +G     + +GFTCIC
Sbjct: 130 CPCKNGGHCVNKVDGFTCIC 149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,648,446
Number of Sequences: 59808
Number of extensions: 367472
Number of successful extensions: 931
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)