Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_N13
         (777 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...   151   6e-39
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    37   2e-04
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    36   3e-04
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    22   6.3  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    22   6.3  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score =  151 bits (366), Expect = 6e-39
 Identities = 79/206 (38%), Positives = 122/206 (59%)
 Frame = -3

Query: 742 VSSLCQIGNKQIAALIVWARDIPHFGQXEIDDQILLIKGSWNELLLFAIAWRSMEFLNDE 563
           V+++CQ  +KQ+  L+ WA+ +PHF    + DQ+ L++  WNELL+ A + RSM+     
Sbjct: 211 VNNICQATHKQLFQLVQWAKLVPHFTSLPLTDQVQLLRAGWNELLIAAFSHRSMQ----- 265

Query: 562 RENVDSRNTAPPQLICLMPGMTLQRNSALQAGVGQIFDRVLSELSLKMRSLRMDQAEYVA 383
                         I L  G+T+ +++A   GVG I+DRVLSEL  KM+ ++MD+ E   
Sbjct: 266 ----------AQDAIVLATGLTVNKSTAHAVGVGNIYDRVLSELVNKMKEMKMDKTELGC 315

Query: 382 LKAIILLNPDVKGLKNKQEVDVLREKMFLCLDEYCRRSRGGEEGXXXXXXXXXXXXRSIS 203
           L+AIIL NPDV+G+K+ QEV++LREK++  L+EY R +   E G            RSI 
Sbjct: 316 LRAIILYNPDVRGIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIG 375

Query: 202 LKSFEHLYLFHLVAEGSVSSYIRDAL 125
           LK  EHL+ F L+ +  + +++ + L
Sbjct: 376 LKCLEHLFFFKLIGDVPIDTFLMEML 401


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 37.1 bits (82), Expect = 2e-04
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -3

Query: 739 SSLCQIGNKQIAALIVWARDIPHFGQXEIDDQILLIKGSWNELLLFAIA 593
           S++C+   + I   + W R IP F    + DQ+LL++ SW +L +   A
Sbjct: 197 SAICESAAQLIFMNVQWVRSIPAFTCLPLSDQLLLLEESWLDLFVLGAA 245


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 36.3 bits (80), Expect = 3e-04
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -3

Query: 739 SSLCQIGNKQIAALIVWARDIPHFGQXEIDDQILLIKGSWNELLLFAIA 593
           S++C+   + +   + W R IP F    + DQ+LL++ SW +L +   A
Sbjct: 197 SAICESAAQLLFMNVQWVRSIPAFTCLPLSDQLLLLEESWLDLFVLGAA 245


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 436 ELSLKMRSLR-MDQAEYVALKAIILLNPDVKGLKNKQE 326
           E  +K ++LR      Y+A K  + +NPD   LKN ++
Sbjct: 600 ERIMKAQALRDTSTMGYMAAKKHLEINPDPSILKNLRQ 637


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 12/44 (27%), Positives = 18/44 (40%)
 Frame = +2

Query: 299 EHLFSKNVHFLFILQSFYVRIEEYDGLERDVLGLVHAEGAHLER 430
           EH F K  H++F    + +      GL     GL+   G   E+
Sbjct: 180 EHFFKKQFHYIFTYMPYNIVF----GLCLTTFGLLPVNGVTSEK 219


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,967
Number of Sequences: 336
Number of extensions: 2410
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)