Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_N13
(777 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 29 0.74
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 4.0
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 26 5.2
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac... 26 6.9
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|... 26 6.9
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 9.2
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 25 9.2
SPBC13G1.12 |did2||vacuolar sorting protein Did2|Schizosaccharom... 25 9.2
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 25 9.2
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 25 9.2
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 29.1 bits (62), Expect = 0.74
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = -3
Query: 469 GVGQIFDRVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGLKNKQEVDVLREKMFLCL 290
G Q+ +RVL S S D + A +L+ + L Q ++ + + L
Sbjct: 642 GESQLIERVLETFSHYYMSANPDSMS--SKDAAFVLSYSIIMLNTDQHNPNIKSQRRMTL 699
Query: 289 DEYCRRSRGGEEG 251
D++CR RG +G
Sbjct: 700 DDFCRNVRGVNDG 712
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.6 bits (56), Expect = 4.0
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 426 SDSSESTRSKICPTPAC-SAELRCSVMPGIKQMS*GGAVFRESTFSRSSLRNSIDRHAIA 602
S +S+ T +K+ T + S+ + + P +S F STFS S ++ HA +
Sbjct: 3671 SSNSKVTSNKVPSTVSPHSSSISDTKSPATVTISSSSGQFTHSTFSTGSTMHNTVSHATS 3730
Query: 603 NSSS 614
SSS
Sbjct: 3731 TSSS 3734
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 26.2 bits (55), Expect = 5.2
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = -2
Query: 749 SSRFESLSNRQQTDSRSHCLGA*HSTLRAXRNRRSDPSNQGLLERTAAVR 600
SS F +L +R Q S + R R+RR DP LLER AV+
Sbjct: 692 SSAFRTLRDRLQCSSTPRT-NTILANERLPRSRRDDPYWTDLLERLKAVQ 740
>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
Alg6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 506
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2
Query: 305 LFSKNVHFLFILQSFYV 355
+FSKNV F FI SFYV
Sbjct: 428 VFSKNVLFRFIQLSFYV 444
>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 885
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 311 SKNVHFLF-ILQSFYVRIEEYDGLERDVLGLVHAE 412
S V +LF I+ S +V I+EY + + LG +H E
Sbjct: 266 STPVTYLFVIIDSEFVLIDEYIHEDTEALGYIHME 300
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 299 EHLFSKNVHFLFILQSFYVRIEEYDGLERDVLGLVHAEGAHLERQ 433
+ + S N HFLF S + Y+ + D GL H+ER+
Sbjct: 690 QDVLSLNPHFLFSNGSCNTSLCYYESTDPDFGGLKTPMSIHIERE 734
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 25.4 bits (53), Expect = 9.2
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +2
Query: 482 GVALQRHAWH*TNELRRRRIPRVYVLSFIIEELHRPPCDSEQQQFVPGAL 631
G+ + +W R+RR + S IIEE+ P SE V G L
Sbjct: 340 GIEDEEDSWENITARRQRRKKGIDETSKIIEEVQPTPLTSESATKVIGVL 389
>SPBC13G1.12 |did2||vacuolar sorting protein
Did2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 178
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -3
Query: 514 LMPGMTLQRNSALQAGVGQIFDRVLSELSLKMRSLRMDQAE 392
L +T++ S AGV + DR + ++L+M S MD+ E
Sbjct: 57 LQTAVTMRAVSGNMAGVVRGMDRAMKTMNLEMISQVMDKFE 97
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 386 DVLGLVHAEGAHLERQLGEHAVEDLPHA 469
DV GL+ GAH + LG ++DL HA
Sbjct: 83 DVAGLI--PGAHAGKGLGNKFLDDLRHA 108
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 463 GQIFDRVLSELSLKMRSLRMDQAEYV 386
G + DRV+S+L ++ S+ D +YV
Sbjct: 770 GNVMDRVVSQLLAELDSISKDNNKYV 795
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,427,726
Number of Sequences: 5004
Number of extensions: 41062
Number of successful extensions: 136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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