Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_N13
         (777 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0445 + 3547176-3547577,3548625-3549557,3550246-3550524,355...    29   4.1  
07_03_0699 + 20772415-20773450,20789050-20789606,20790971-207915...    29   5.4  
05_01_0538 + 4646772-4647059,4647462-4647542,4647819-4647890,464...    28   7.2  
02_03_0356 + 18073794-18074052,18074054-18074163                       28   7.2  
08_01_0480 + 4219844-4220188,4221101-4221250                           28   9.5  

>05_01_0445 +
           3547176-3547577,3548625-3549557,3550246-3550524,
           3550624-3550752,3550813-3550869
          Length = 599

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 176 VPPRGRGQRELVHPRR-ALQPRAAHR 102
           +P  G G+R+  HPRR  L+PR  HR
Sbjct: 12  IPTGGGGRRQHPHPRRPGLRPRRLHR 37


>07_03_0699 +
           20772415-20773450,20789050-20789606,20790971-20791567,
           20792258-20792413
          Length = 781

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -2

Query: 188 APLPVPPRGRGQRELVHPRRALQPRAAHRH 99
           AP P P RGRG    VHPR+ +    A RH
Sbjct: 137 APAPHPARGRG----VHPRQPIAVAPAARH 162


>05_01_0538 +
           4646772-4647059,4647462-4647542,4647819-4647890,
           4648458-4649321
          Length = 434

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -2

Query: 746 SRFESLSNRQQTDSRSHCLGA*HSTLRAXRNRRSDPSNQGLLERTAAVRYRMA 588
           SR    S+R ++ SRS       S  R+    RS P      E+TAA+   +A
Sbjct: 345 SRHRRSSSRHRSRSRSRSRSRSRSRSRSRNEERSSPFGNAGKEKTAAISSNLA 397


>02_03_0356 + 18073794-18074052,18074054-18074163
          Length = 122

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 384 ATYSAWSMRRERILSDSS--ESTRSKICPTPACSAELR 491
           AT S  + ++ R  +D+S  ES RSK+CP  +  A LR
Sbjct: 12  ATTSCSASKKPRASTDASYAESLRSKLCPDASILATLR 49


>08_01_0480 + 4219844-4220188,4221101-4221250
          Length = 164

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 164 GRGQRELVHPRRALQPRAAHR 102
           G G+++LVH RR  +P  AHR
Sbjct: 18  GAGKQQLVHARRRRRPAHAHR 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,231,652
Number of Sequences: 37544
Number of extensions: 315243
Number of successful extensions: 990
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)