Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_N13
         (777 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g22882.1 68414.m02857 expressed protein                             33   0.16 
At3g54090.1 68416.m05980 pfkB-type carbohydrate kinase family pr...    30   1.5  
At1g43730.1 68414.m05028 hypothetical protein                          30   2.0  
At1g61550.1 68414.m06934 S-locus protein kinase, putative simila...    29   4.5  
At2g26650.1 68415.m03197 potassium channel protein 1 (AKT1) iden...    28   6.0  

>At1g22882.1 68414.m02857 expressed protein
          Length = 660

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
 Frame = -3

Query: 457 IFDRVLSELSLKMRSL--RMDQAEYVALKAIILLNPDVKGLKNKQE 326
           I +R L EL+L+  ++   MD+   V  KAI+ L  D++G+K +QE
Sbjct: 516 ILERYLEELNLRYGNIFKEMDREAGVREKAIVALRLDLEGMKERQE 561


>At3g54090.1 68416.m05980 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 471

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = -3

Query: 718 NKQIAALIVWARDIPHFGQXEIDDQILLIKGSWNELLLFAIAWRSMEFLNDERENVDSRN 539
           +K+   LI +  ++P       ++   LIK +WNE  +  ++ + +EFL DE      RN
Sbjct: 268 SKKFGGLIFFDLNLPLPLWRSRNETRKLIKKAWNEANIIEVSQQELEFLLDEDYYERRRN 327

Query: 538 TAP 530
             P
Sbjct: 328 YTP 330


>At1g43730.1 68414.m05028 hypothetical protein
          Length = 320

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -3

Query: 493 QRNSALQAGVGQIFDRVLSELSLKMRSLRMD 401
           +RN  L  GV ++FD VL ++ L +R+ R+D
Sbjct: 266 ERNLCLHTGVARVFDSVLKDIQLTIRA-RLD 295


>At1g61550.1 68414.m06934 S-locus protein kinase, putative similar
           to receptor protein kinase [Ipomoea trifida]
           gi|836954|gb|AAC23542; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 802

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 155 QRELVHPRRALQPRAAHRHQHHVGGLIQLLNVDMPTSTCKFY 30
           QR        L    + +  HH  G   +LN+D+P +TC FY
Sbjct: 240 QRNFKRSLLVLTSEGSLKVTHH-NGTDWVLNIDVPANTCDFY 280


>At2g26650.1 68415.m03197 potassium channel protein 1 (AKT1)
           identical to AKT1 [Arabidopsis thaliana]
           gi|563112|gb|AAA96810; member of the 1 pore, 6
           transmembrane (1P/6TM- Shaker-type) K+ channel family,
           PMID:11500563
          Length = 857

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = -3

Query: 679 IPHFGQXEIDDQILLIKGSWNELLLFAIAWRSMEFLNDERENVDSRNTAPPQLICLMPG 503
           I HF    + D++ L +G  N+LL   ++    E+    +E+V  +N AP     L+ G
Sbjct: 358 ISHFLFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYF-PPKEDVILQNEAPTDFYILVNG 415


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,097,467
Number of Sequences: 28952
Number of extensions: 226952
Number of successful extensions: 620
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)