Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_N09
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    35   0.012
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    31   0.19 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    31   0.25 
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    29   0.58 
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    28   1.3  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    28   1.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.8  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   3.1  
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    26   5.4  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    26   5.4  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    26   7.1  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    26   7.1  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    25   9.4  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.4  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 35.1 bits (77), Expect = 0.012
 Identities = 28/83 (33%), Positives = 40/83 (48%)
 Frame = -1

Query: 615 SRTNCGTRATRTSSKITSRANSNSYSTKRELNSSATITIKLSNWMLTLTGTKTA*PGEME 436
           S  N  T AT TSS ++S A SNS +T   L SS+       N   + T T ++    + 
Sbjct: 198 SSLNSTTSATATSSSLSSTAASNS-ATSSSLASSSL------NSTTSATATSSSISSTVS 250

Query: 435 KTTPATESAGDSSLFGKTTTSSS 367
            +TP T S   ++    + TSSS
Sbjct: 251 SSTPLTSSNSTTAATSASATSSS 273



 Score = 30.7 bits (66), Expect = 0.25
 Identities = 26/76 (34%), Positives = 40/76 (52%)
 Frame = -1

Query: 594 RATRTSSKITSRANSNSYSTKRELNSSATITIKLSNWMLTLTGTKTA*PGEMEKTTPATE 415
           RAT + +  TS A+S+S ++    +SS T +  L++   +   T +A P     T+    
Sbjct: 58  RATTSYNYNTSSASSSSLTSSSAASSSLTSSSSLAS--SSTNSTTSASPTSSSLTS---S 112

Query: 414 SAGDSSLFGKTTTSSS 367
           SA  SSL   +TTSSS
Sbjct: 113 SATSSSLASSSTTSSS 128



 Score = 27.5 bits (58), Expect = 2.3
 Identities = 23/83 (27%), Positives = 39/83 (46%)
 Frame = -1

Query: 615 SRTNCGTRATRTSSKITSRANSNSYSTKRELNSSATITIKLSNWMLTLTGTKTA*PGEME 436
           S T+    ++ TSS ++S A SNS ++    +SS   T   +    +L+ T  +      
Sbjct: 166 STTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSLSSTAAS----NS 221

Query: 435 KTTPATESAGDSSLFGKTTTSSS 367
            T+ +  S+  +S    T TSSS
Sbjct: 222 ATSSSLASSSLNSTTSATATSSS 244



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = -1

Query: 582 TSSKITSRANSNSYSTKRELNSSATITIKLSNWMLTLTGTKTA*PGE-MEKTTPATESAG 406
           TSS   + +++NS ++    +SS T +   S+ + + + T ++     +  ++ A+ S  
Sbjct: 86  TSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSIT 145

Query: 405 DSSLFGKTTTSSS 367
            SSL   +TTSSS
Sbjct: 146 SSSLASSSTTSSS 158


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 22/72 (30%), Positives = 35/72 (48%)
 Frame = -1

Query: 582 TSSKITSRANSNSYSTKRELNSSATITIKLSNWMLTLTGTKTA*PGEMEKTTPATESAGD 403
           ++S +   +  +S S+    NSS T T+  SN  +T TGT T         T ++    +
Sbjct: 458 SNSSVIPTSAPSSVSSFTSSNSSYTTTLTASNTTVTFTGTGTG----SATATSSSPYYSN 513

Query: 402 SSLFGKTTTSSS 367
           SS+   TT S+S
Sbjct: 514 SSIIVPTTVSTS 525



 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 582 TSSKITSRANSNSYSTKRELNSSATITIKLSNWMLTLTGTKT 457
           ++S +   +  +S S+    NSS T T+  SN  +T TGT T
Sbjct: 350 SNSSVIPTSVPSSVSSFTSSNSSYTTTLTASNTSITYTGTGT 391



 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 582 TSSKITSRANSNSYSTKRELNSSATITIKLSNWMLTLTGTKT 457
           ++S +   +  +S S+    NSS T T+  SN  +T TGT T
Sbjct: 404 SNSSVIPTSVPSSVSSFTSSNSSYTTTLTASNTTVTFTGTGT 445


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = -1

Query: 597 TRATRTSSKITSRANSNSYS-TKRELNSSATITIKLSNWMLTLTGTKTA*PGEMEKTTPA 421
           T ++ T S  +S  +S+S+S T     SS++ +  +S+   T + T T+       + PA
Sbjct: 337 TSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTS--SSSSSSRPA 394

Query: 420 TESAGDSSLFGKTTTSSSR 364
           + S+  SSL    ++SSS+
Sbjct: 395 SSSSHSSSLSSHKSSSSSK 413



 Score = 25.8 bits (54), Expect = 7.1
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
 Frame = -1

Query: 615 SRTNCGTRATRTSSKITSRANSNSYSTKRELNSSATIT-IKLSNWMLTLTGTKTA*PGEM 439
           S T      T TSS   S ++  S S+    +SS+T+T   LS   +  T + ++     
Sbjct: 194 SSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSS 253

Query: 438 EKTTPATESAGDSSLFGKTTTSSS 367
             ++ ++ +A  SS      +SSS
Sbjct: 254 LSSSSSSSTASSSSSSSSIISSSS 277


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +3

Query: 123 SRYSPTQGGPRYRSTFASSFRP 188
           S+YS TQ  PR  ST A SF+P
Sbjct: 135 SKYSITQDSPRVSSTIAYSFKP 156


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -3

Query: 400 ISLWENNNVIFKILNTEHEMYLKLDVNVDRYGDRKTWGSNDSSEKRHTWYLY 245
           ISL    +V  + L +  E+ L L++ ++RYG  K W S D S  ++   LY
Sbjct: 109 ISLKSEKDVFLQGLLSMDEIELLLEIFIERYG--KRWLSVDYSASQYMELLY 158


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 125 PLFPHTRRSPXPVHVRVQLQALPVLP--ILNEEQLLVAHL 238
           PLF    +S  P+ + V LQAL V P  +L E + ++  L
Sbjct: 852 PLFAVVEKSKNPIILHVVLQALDVFPWDLLGEHKKIIQQL 891


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 22/87 (25%), Positives = 39/87 (44%)
 Frame = -1

Query: 627 TPCRSRTNCGTRATRTSSKITSRANSNSYSTKRELNSSATITIKLSNWMLTLTGTKTA*P 448
           T C + T+  T     S+  TS A++   S+    ++S + T   S   +  TG  ++  
Sbjct: 75  TSCTTDTSASTPIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTS---IPPTGGSSSLS 131

Query: 447 GEMEKTTPATESAGDSSLFGKTTTSSS 367
             +  T P T ++  S     T+TSS+
Sbjct: 132 TPITPTVPPTSTSSTSIPIPPTSTSST 158


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 18/72 (25%), Positives = 34/72 (47%)
 Frame = -1

Query: 588  TRTSSKITSRANSNSYSTKRELNSSATITIKLSNWMLTLTGTKTA*PGEMEKTTPATESA 409
            T +S+   + A+    ST     +SAT +   S  + ++TG+ T+       T  +T S 
Sbjct: 1010 TGSSTSSVATASVTDSSTSSVATASATDSSTSSIAVASVTGSSTSSVATASATDSSTSSV 1069

Query: 408  GDSSLFGKTTTS 373
              +S+ G  ++S
Sbjct: 1070 ATASITGSLSSS 1081



 Score = 25.8 bits (54), Expect = 7.1
 Identities = 19/73 (26%), Positives = 34/73 (46%)
 Frame = -1

Query: 591  ATRTSSKITSRANSNSYSTKRELNSSATITIKLSNWMLTLTGTKTA*PGEMEKTTPATES 412
            AT +S+   + A+ +  ST     +SAT +   S    ++TG+ T+       T  +T S
Sbjct: 970  ATGSSTSSIATASVSGSSTSSVATASATDSSTSSIAAASVTGSSTSSVATASVTDSSTSS 1029

Query: 411  AGDSSLFGKTTTS 373
               +S    +T+S
Sbjct: 1030 VATASATDSSTSS 1042


>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 356 HRTRDVLETGRERGQIWRQEDL 291
           H+ +D +E  R+RG  W  ED+
Sbjct: 121 HKVKDCMERPRKRGARWTGEDI 142


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
 Frame = +1

Query: 76   PRLDYEAVVLGVVGDCPVIP--PHKAVPXTGPRSRPASGPAGTPDSQ*GTAVGRPPSPGI 249
            PRL          G  PV+   P    P + P ++    P   P S       RPP+P +
Sbjct: 972  PRLATGGSTAAARGPRPVVQNKPAATKPVSMPAAKSKPAPMANPVSTAQQTQNRPPAPAM 1031

Query: 250  NTR 258
              R
Sbjct: 1032 QAR 1034


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 382 NNVIFKILNTEHEMYLKLDVNVDRY 308
           N+V+F+ L  E++ Y  +  N DR+
Sbjct: 207 NSVVFQYLKDENKFYFGVSANQDRF 231


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +1

Query: 124 PVIPPHKAVPXTGPRSRPASGPAG-TPDS 207
           P+IPP K  P     S PASG    TP S
Sbjct: 452 PLIPPLKCDPNAFSASTPASGAVSRTPSS 480


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/72 (20%), Positives = 36/72 (50%)
 Frame = -1

Query: 591 ATRTSSKITSRANSNSYSTKRELNSSATITIKLSNWMLTLTGTKTA*PGEMEKTTPATES 412
           +T+ S+  ++ A + + +T   + ++ T T+  +N   T+T T  +     + +T  +  
Sbjct: 196 STKASTVTSTEATTVTTTTAVTVTATETYTVTATNGGSTITSTGASTVTSTQPSTVTSTQ 255

Query: 411 AGDSSLFGKTTT 376
             +++   KTTT
Sbjct: 256 RKNTATTTKTTT 267


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -2

Query: 626 RHVVRVQIVARGPQGHRRRLLPERIPTHTRPKEN--*THRQPLQSSS 492
           RH + V I +R P    R+L P  + TH + K N   + ++P  SSS
Sbjct: 335 RHSIYVSIHSREPSSLSRKLAPPFLRTH-KAKSNSLFSMKRPSSSSS 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,074,414
Number of Sequences: 5004
Number of extensions: 66279
Number of successful extensions: 217
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)