Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_N09
         (795 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26106| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.53)           33   0.27 
SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17)             32   0.47 
SB_36190| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.62 
SB_30095| Best HMM Match : HCV_core (HMM E-Value=1.7)                  32   0.62 
SB_9125| Best HMM Match : Sulfotransfer_2 (HMM E-Value=1.4013e-45)     32   0.62 
SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0)                      30   1.9  
SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21)                30   1.9  
SB_20304| Best HMM Match : Vicilin_N (HMM E-Value=4.6)                 29   3.3  
SB_15012| Best HMM Match : zf-CCHC (HMM E-Value=1.1e-05)               29   4.3  
SB_8632| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.3  
SB_43504| Best HMM Match : Urotensin_II (HMM E-Value=0.05)             29   5.7  
SB_15570| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_6617| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.7  
SB_33399| Best HMM Match : Ank (HMM E-Value=0)                         29   5.7  
SB_4414| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  

>SB_26106| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.53)
          Length = 291

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = -1

Query: 627 TPCRSRTNCGTRATRTSSKITSRANSNSYSTKRELNSSATITIKLSNWML 478
           T   S+T  GT    T+   T++ ++  Y+T + + + +  T+K +NW+L
Sbjct: 237 TARHSKTQHGTTQHSTTQHSTTQYSTTQYNTTQHVTTRSASTVKHNNWLL 286


>SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17)
          Length = 1086

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -1

Query: 624 PCRSRTNCGTRATRTSSKITSRANSNSYSTKRELNSSATIT 502
           P  S T CG  AT+T+S I+  A+++  +T   ++S   +T
Sbjct: 730 PTVSTTTCGAAATKTTSAISQGASTSLQATTHSVSSPTNVT 770


>SB_36190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 993

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = -3

Query: 649 LVSQGIKNAMSFAYKLWHEGHKDIVEDYFPSEFQLILDQKRIKLIGNHYNQALKL 485
           LV Q + + +    K   + H +I+E    SE   +L  + ++ + NH + AL+L
Sbjct: 268 LVHQSLSHTIKLIIKFTSKEHGEIIERCLTSEIDRLLSLEPLQGVANHLSSALEL 322


>SB_30095| Best HMM Match : HCV_core (HMM E-Value=1.7)
          Length = 136

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = -3

Query: 685 QGSGVCRDVVSRLVSQGIKNAMSFAYKLWHEGHKDIVEDYFPSEFQLILDQKRIKLIGNH 506
           +  G C D +   V Q + + +    K   + H +I+E    SE   +L  + ++ + NH
Sbjct: 23  KSKGKCGDSI---VHQSLSHTIKLIIKFTSKEHGEIIERCLTSEIDRLLSLEPLQGVANH 79

Query: 505 YNQALKL 485
            + AL+L
Sbjct: 80  LSSALEL 86


>SB_9125| Best HMM Match : Sulfotransfer_2 (HMM E-Value=1.4013e-45)
          Length = 480

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -3

Query: 487 LDANVDRYKDRLTWGDGKDYTSYRVSW 407
           LD  +  YKD+LT GD   Y +YRV+W
Sbjct: 323 LDRIISAYKDKLT-GDNDYYQAYRVNW 348


>SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0)
          Length = 695

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 133 PPHKAVPXTGPRSRPASGPAGTPDSQ*GTAVGRP-PSPGINTR 258
           P  K  P T PRS P + P G+P S   + VG P  SP +  R
Sbjct: 342 PSPKNSPRTSPRSSPFASPTGSPTS---SPVGSPAQSPSVFRR 381


>SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21)
          Length = 1049

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 108 GCRRLSRYSPTQGGPRYRSTFASSFRPCRYSRFSMRNSCWSPTFTGYKY 254
           GCR+  +YS      R++ T  S  RP R +  S+ + C  P F G  +
Sbjct: 253 GCRQ--KYSRLDASTRHQWTARSVLRPSRIASISLLSLCPLPQFLGVDF 299


>SB_20304| Best HMM Match : Vicilin_N (HMM E-Value=4.6)
          Length = 261

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 24/87 (27%), Positives = 33/87 (37%)
 Frame = -1

Query: 627 TPCRSRTNCGTRATRTSSKITSRANSNSYSTKRELNSSATITIKLSNWMLTLTGTKTA*P 448
           T  ++R   G + +R +S  TSR  S     K    +S   + K        T TKT   
Sbjct: 8   TSPKTRRKTGRKTSRKTSPKTSRKTSRKTGRKTSPKTSPKTSPKTGRKTSWKTSTKTG-- 65

Query: 447 GEMEKTTPATESAGDSSLFGKTTTSSS 367
               KT+P T         GKT+   S
Sbjct: 66  ---RKTSPKTSLNASRKTSGKTSLKRS 89


>SB_15012| Best HMM Match : zf-CCHC (HMM E-Value=1.1e-05)
          Length = 410

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = +1

Query: 109 VVGDCPVIPPHKAVPXTGPRSRPASGPAGTPDSQ*GTAVGRPPSPGINTRCVSSHWNHSI 288
           VV  CP +    A    G R+   +G AGTP +   T+  R  +PG +   VSS  + S+
Sbjct: 180 VVARCPALAVPVAAGSPGSRAVSVAGGAGTPVA---TSADRSVAPG-DAEPVSSSISVSV 235

Query: 289 P 291
           P
Sbjct: 236 P 236


>SB_8632| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1296

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = -1

Query: 597 TRATRTSSKITSRANSNSYSTKRELNSSATITIKLSNWMLTLTGTKTA*PGEMEKTTPA- 421
           T  T     +T+ A ++  +T  ++ +S  +T +      TLT T+T    +   TT   
Sbjct: 504 TYTTTALVTMTTTAIASITTTSTDIATSTLVTTETKTDTATLTTTRTDIASKTVYTTKTR 563

Query: 420 TESAGDSSLFGKTTTSSSRY 361
           T+    +++   TTTS+S Y
Sbjct: 564 TDVQTSTAVVSLTTTSTSTY 583


>SB_43504| Best HMM Match : Urotensin_II (HMM E-Value=0.05)
          Length = 444

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +3

Query: 111 CRRLSRYSPTQGGPRYRSTFASSFRPCRY-SRFSMRNSCWS 230
           CR +S Y    G  RY ST+      CRY S +   N  WS
Sbjct: 391 CRYVSTYDCMNGYCRYVSTYDCMNGYCRYVSTYDCMNGYWS 431


>SB_15570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 484

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 144 GGPRYRSTFASSFRPCRYSRFSMRNSCWSPTFTGYKYQVCLF 269
           G PR  S F  +    R+SRF        PTF+G K+   +F
Sbjct: 118 GSPRETSAFCEAM--LRFSRFRFERCKQRPTFSGLKFSNDMF 157


>SB_6617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 183 RPCRYSRFSMRNSCWSPTFTGYKYQVCLFSLESFDPQVFLSPYLST 320
           RPC  S  S     +  + T  +  +CL S+ S DPQ+ L+   ST
Sbjct: 55  RPCLTSMTSTHPQPYLTSITTTEPPLCLTSITSTDPQLCLTSITST 100


>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1416

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 435  KTTPATESAGDSSLFGKTTTSSSRY 361
            K TPA  S+G +++  KTTTS S +
Sbjct: 1044 KPTPAIPSSGSTAITAKTTTSGSNH 1068


>SB_4414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 877

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 202 DSQ*GTAV-GRPPSPGINTRCVSSHWNHSIPRSSCR 306
           D Q  TA  GRPPS   +    SS+W+ S+ R+  R
Sbjct: 196 DGQRATAQEGRPPSVSSDLSVASSYWDPSLTRTRSR 231


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,074,546
Number of Sequences: 59808
Number of extensions: 547940
Number of successful extensions: 2049
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2036
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)