Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_N09
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.46 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   5.7  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   5.7  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   5.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   10.0 
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   10.0 
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   10.0 
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   10.0 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   10.0 

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.46
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 136 PHKAVPXTGPRSRPASGPAGTPDSQ*GTAVGRPPSPGIN 252
           P +  P    +  P  GP G P SQ  + +   P+ GI+
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPASGIH 72



 Score = 21.4 bits (43), Expect = 10.0
 Identities = 9/29 (31%), Positives = 11/29 (37%)
 Frame = +3

Query: 588 WPSCHNLYANDMAFLMPCETSRETTSRQT 674
           WP C  +  +  AFL    T      R T
Sbjct: 285 WPGCEVICEDYQAFLKHLNTEHTLDDRST 313


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -3

Query: 478 NVDRYKDRLTWGDGKDYTSYRVSWRLISLWENNNVIFKILNTE 350
           N + +KD+  W D  + + +    ++    + N + FKI  TE
Sbjct: 489 NTEIFKDKSDWFDYSEVSKWVQKGQICLKEKENEIDFKIEVTE 531


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = -3

Query: 385 NNNVIFKILNTEHEMYLKLDVNVDRYGDRKTWGSNDSSEKRH 260
           N NV+   LN EH  +  L  NV+         + D+ +  H
Sbjct: 383 NQNVLNNDLNLEHVNFQILGANVNDLIRNSRCANFDNQDNNH 424


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/18 (50%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = +3

Query: 261 CLFSLESFDPQV-FLSPY 311
           C+ S ES++PQV F++ Y
Sbjct: 114 CILSSESYNPQVDFVADY 131


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 540 SMSWNSLGK*SSTMSLWPSCHNLY 611
           ++S NSLG  S +     SCH+ Y
Sbjct: 211 AISSNSLGSRSRSFQRTSSCHSRY 234


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 386  KQQRHLQDTEHRTRDVLETGRERGQIWRQED 294
            K Q   QDT   T+ +L+       IW+Q++
Sbjct: 927  KWQHKSQDTTEVTKYILQYKEGDAGIWQQQE 957


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 386  KQQRHLQDTEHRTRDVLETGRERGQIWRQED 294
            K Q   QDT   T+ +L+       IW+Q++
Sbjct: 923  KWQHKSQDTTEVTKYILQYKEGDAGIWQQQE 953


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 638 LRDEPRDDVATDAGXLVVVXAAHSLHRVDVXPARN 742
           +RD     +  + G  VV   +H+L+++D    RN
Sbjct: 126 VRDHNISALCKELGISVVQKVSHTLYKLDEIIERN 160


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -3

Query: 295 TWGSNDSSEKRHTWYLYPVKVGDQQL--FLIENREYRQGLKLDA 170
           +W  NDS    H ++ +  + G+  +  F  + ++   GL L A
Sbjct: 203 SWAKNDSWRITHNFFYFDPRYGNYNINGFNFQWKDGLFGLSLSA 246


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +1

Query: 28  SDKVYYNMVRCRRVSLP 78
           S K+YYN++   ++ +P
Sbjct: 320 SKKLYYNIINIEQIPVP 336


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +1

Query: 28  SDKVYYNMVRCRRVSLP 78
           S K+YYN++   ++ +P
Sbjct: 331 SKKLYYNIINIEQIPVP 347


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 371 LQDTEHRTRDVLETGRERG 315
           LQD E+  R +  T RERG
Sbjct: 468 LQDREYCPRYIKWTNRERG 486


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,057
Number of Sequences: 438
Number of extensions: 5378
Number of successful extensions: 16
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)