Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_N08
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   0.58 
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    26   7.2  

>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 232 YGLWFPWFTFDVYYFSFYIRFQSTLERSILYICYCKN 122
           Y ++  + T+  Y+F     F   ++R ++Y CYC N
Sbjct: 25  YEVYMLYKTYTSYFFMSSKSFVRGVKRYLIYFCYCAN 61


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 252 AKRTHENMVYGFHGLRLTFIIFHFILDSKVH 160
           AK T+E + + +H LR+   I  F+LD   H
Sbjct: 356 AKHTYETIYHQWHSLRIREQIASFMLDIADH 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,234,566
Number of Sequences: 5004
Number of extensions: 73433
Number of successful extensions: 169
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)