Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_N08
         (802 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00049-2|AAC47052.2|  327|Caenorhabditis elegans Serpentine rece...    28   6.8  
AF125952-2|AAD14700.1|  478|Caenorhabditis elegans Hypothetical ...    28   6.8  
AC006722-8|AAK68418.2|  478|Caenorhabditis elegans Hypothetical ...    28   6.8  

>U00049-2|AAC47052.2|  327|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 2 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
 Frame = -3

Query: 668 YYPMAKNKKKTKSLLF----SIFHI-IAHMIIWKEKNIYIFVSFH 549
           Y P+A+N K     ++    ++ H  I ++++WK +N+Y+  SF+
Sbjct: 25  YSPLAENLKYLVQFVYLLPAAMLHARILYILLWKHRNLYLKQSFY 69


>AF125952-2|AAD14700.1|  478|Caenorhabditis elegans Hypothetical
           protein C01B4.8 protein.
          Length = 478

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 578 FLSKLSCGL*YERC*KEAISFFFCSSPWGNINLXKIFG 691
           FL+ LSC   +       IS F C S WG  ++  +FG
Sbjct: 176 FLAVLSCAFQWSNVICMPISGFLCESSWGWRSIYYLFG 213


>AC006722-8|AAK68418.2|  478|Caenorhabditis elegans Hypothetical
           protein Y19D10A.5 protein.
          Length = 478

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 578 FLSKLSCGL*YERC*KEAISFFFCSSPWGNINLXKIFG 691
           FL+ LSC   +       IS F C S WG  ++  +FG
Sbjct: 176 FLAVLSCAFQWSNVICMPISGFLCESSWGWRSIYYLFG 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,307,287
Number of Sequences: 27780
Number of extensions: 391564
Number of successful extensions: 881
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)