Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_N07
(749 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P49821 Cluster: NADH dehydrogenase [ubiquinone] flavopr... 220 3e-56
UniRef50_A1ZAW7 Cluster: CG11423-PA; n=2; Drosophila melanogaste... 190 2e-47
UniRef50_Q4UKA6 Cluster: NADH-quinone oxidoreductase subunit F; ... 174 2e-42
UniRef50_Q6MDR1 Cluster: Probable NADH-ubiquinone oxidoreductase... 118 2e-25
UniRef50_P56913 Cluster: NADH-quinone oxidoreductase subunit F 2... 118 2e-25
UniRef50_Q8F7Q4 Cluster: NADH dehydrogenase I, F subunit; n=9; B... 114 2e-24
UniRef50_A7CUG0 Cluster: NADH dehydrogenase; n=1; Opitutaceae ba... 114 3e-24
UniRef50_Q9XAQ9 Cluster: NADH-quinone oxidoreductase subunit F; ... 108 2e-22
UniRef50_Q1IS37 Cluster: NADH-quinone oxidoreductase, F subunit;... 107 2e-22
UniRef50_A1ALP4 Cluster: NADH dehydrogenase; n=1; Pelobacter pro... 106 5e-22
UniRef50_Q2S5I8 Cluster: Respiratory-chain NADH dehydrogenase 51... 104 3e-21
UniRef50_Q1IZW8 Cluster: NADH-quinone oxidoreductase, F subunit;... 99 6e-20
UniRef50_A6FCN1 Cluster: NuoF2 NADH I CHAIN F; n=1; Moritella sp... 99 1e-19
UniRef50_A5UVG4 Cluster: NADH-quinone oxidoreductase, F subunit;... 99 1e-19
UniRef50_Q56222 Cluster: NADH-quinone oxidoreductase subunit 1; ... 97 4e-19
UniRef50_Q2AG83 Cluster: 4Fe-4S ferredoxin, iron-sulfur binding:... 91 2e-17
UniRef50_A0RMD3 Cluster: NADH-quinone oxidoreductase chain f; n=... 91 2e-17
UniRef50_Q2LQE7 Cluster: NADH-quinone oxidoreductase chain F; n=... 91 4e-17
UniRef50_Q746S7 Cluster: NADH dehydrogenase I, F subunit; n=7; D... 90 6e-17
UniRef50_Q2C5T6 Cluster: NADH dehydrogenase I, F subunit; n=2; V... 90 6e-17
UniRef50_Q2LYA9 Cluster: NADH:ubiquinone oxidoreductase, NADH-bi... 89 1e-16
UniRef50_Q6AQG1 Cluster: Probable NADP-reducing hydrogenase, 51 ... 87 3e-16
UniRef50_Q8RBC9 Cluster: NADH:ubiquinone oxidoreductase, NADH-bi... 85 2e-15
UniRef50_P74024 Cluster: Hydrogenase subunit; n=13; Bacteria|Rep... 85 2e-15
UniRef50_Q2LS97 Cluster: NADH-quinone oxidoreductase chain F; n=... 85 2e-15
UniRef50_A4MHV7 Cluster: NADH dehydrogenase; n=5; Bacteria|Rep: ... 85 2e-15
UniRef50_A1Z9Z7 Cluster: CG8102-PA, isoform A; n=4; Sophophora|R... 84 3e-15
UniRef50_A5FXJ6 Cluster: NADH dehydrogenase; n=1; Acidiphilium c... 83 9e-15
UniRef50_A2DV30 Cluster: Respiratory-chain NADH dehydrogenase 51... 82 1e-14
UniRef50_Q9WY70 Cluster: NADP-reducing hydrogenase, subunit C; n... 80 7e-14
UniRef50_Q8ABI5 Cluster: NADH:ubiquinone oxidoreductase subunit;... 80 7e-14
UniRef50_A3ETZ6 Cluster: NADH ubiquinone oxidoreductase; n=1; Le... 79 9e-14
UniRef50_Q3ZXP7 Cluster: Hydrogenase subunit HymB; n=7; Bacteria... 79 1e-13
UniRef50_A3EW61 Cluster: NADH ubiquinone oxidoreductase; n=1; Le... 79 1e-13
UniRef50_Q835I8 Cluster: NAD-dependent formate dehydrogenase, be... 78 3e-13
UniRef50_O27592 Cluster: NADP-reducing hydrogenase, subunit C; n... 77 5e-13
UniRef50_Q47HE6 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 77 6e-13
UniRef50_Q6N1Z2 Cluster: NADH-ubiquinone dehydrogenase chain F; ... 76 1e-12
UniRef50_Q9I0J7 Cluster: NADH-quinone oxidoreductase subunit F; ... 75 2e-12
UniRef50_A6GJI0 Cluster: Putative NADH dehydrogenase I chain F; ... 75 2e-12
UniRef50_A5FSK8 Cluster: NADH dehydrogenase; n=3; Dehalococcoide... 73 1e-11
UniRef50_A6PMG7 Cluster: NADH dehydrogenase (Quinone) precursor;... 71 3e-11
UniRef50_O66841 Cluster: NADH-quinone oxidoreductase subunit F; ... 70 5e-11
UniRef50_A7IMB3 Cluster: NADH dehydrogenase; n=3; Proteobacteria... 69 1e-10
UniRef50_A0NMW4 Cluster: NADH:ubiquinone oxidoreductase, NADH-bi... 68 2e-10
UniRef50_Q51696 Cluster: Putative uncharacterized protein ORF2; ... 68 3e-10
UniRef50_A5N6F8 Cluster: NADH dehydrogenase-related protein; n=1... 67 4e-10
UniRef50_UPI0000384AE3 Cluster: COG1894: NADH:ubiquinone oxidore... 66 7e-10
UniRef50_Q9ZBV8 Cluster: Putative respiratory chain oxidoreducta... 66 7e-10
UniRef50_Q603S6 Cluster: NAD-reducing hydrogenase, alpha subunit... 62 1e-08
UniRef50_A1WBG0 Cluster: NADH dehydrogenase (Quinone) precursor;... 62 1e-08
UniRef50_O94500 Cluster: Iron sulfur cluster assembly protein; n... 61 3e-08
UniRef50_Q5P4U3 Cluster: Formate dehydrogenase, NAD(P) reducing,... 60 4e-08
UniRef50_Q18DS5 Cluster: NAD-reducing hydrogenase, alpha subunit... 60 4e-08
UniRef50_A6LZW7 Cluster: 4Fe-4S ferredoxin, iron-sulfur binding ... 60 6e-08
UniRef50_P77907 Cluster: Formate dehydrogenase beta subunit; n=2... 60 8e-08
UniRef50_Q7WMR8 Cluster: NAD-dependent formate dehydrogenase bet... 58 2e-07
UniRef50_Q6NDH3 Cluster: Possible oxidoreductase; n=5; Proteobac... 58 2e-07
UniRef50_Q3A639 Cluster: NADH:ubiquinone oxidoreductase, NADH-bi... 58 2e-07
UniRef50_A1SU84 Cluster: Hydrogenase, NADP-reducing subunit C; n... 57 4e-07
UniRef50_Q1V283 Cluster: NAD-dependent formate dehydrogenase bet... 53 7e-06
UniRef50_A1HDX5 Cluster: NADH dehydrogenase; n=4; Ralstonia pick... 53 7e-06
UniRef50_A6Q1P8 Cluster: FAD-dependent pyridine nucleotide-disul... 52 2e-05
UniRef50_Q1K3H5 Cluster: FAD-dependent pyridine nucleotide-disul... 50 6e-05
UniRef50_Q73MB5 Cluster: Pyridine nucleotide-disulphide oxidored... 49 1e-04
UniRef50_Q2AFM4 Cluster: Respiratory-chain NADH dehydrogenase do... 49 1e-04
UniRef50_A1SNE6 Cluster: Respiratory-chain NADH dehydrogenase do... 48 2e-04
UniRef50_A6QCF8 Cluster: FAD-dependent pyridine nucleotide-disul... 46 8e-04
UniRef50_A5X3H0 Cluster: HtxX; n=1; Xanthobacter flavus|Rep: Htx... 46 0.001
UniRef50_Q65UM2 Cluster: GltD protein; n=2; Pasteurellaceae|Rep:... 45 0.002
UniRef50_Q5V638 Cluster: Putative NADH dehydrogenase I, F subuni... 45 0.002
UniRef50_Q1PZQ6 Cluster: Similar to NADH dehydrogenase I chain F... 44 0.003
UniRef50_Q74FU5 Cluster: Fe(III) reductase, beta subunit; n=6; G... 44 0.004
UniRef50_A0K164 Cluster: NADH dehydrogenase; n=2; Actinomycetale... 44 0.004
UniRef50_Q9ACZ1 Cluster: Putative oxidoreductase; n=3; Streptomy... 44 0.005
UniRef50_Q4AEJ7 Cluster: Hydrogen dehydrogenase; n=1; Chlorobium... 43 0.007
UniRef50_O96948 Cluster: Hydrogenase; n=14; Eukaryota|Rep: Hydro... 41 0.028
UniRef50_UPI00006DD0D0 Cluster: hypothetical protein Bmal2_03001... 37 0.61
UniRef50_Q67JR5 Cluster: NADH dehydrogenase subunit; n=1; Symbio... 36 0.81
UniRef50_UPI0000E479C5 Cluster: PREDICTED: similar to mitochondr... 36 1.4
UniRef50_UPI0000DB7593 Cluster: PREDICTED: similar to NFAT CG111... 35 1.9
UniRef50_A1SFH1 Cluster: Pentapeptide repeat protein; n=1; Nocar... 34 4.3
UniRef50_Q62CS2 Cluster: Conserved domain protein; n=1; Burkhold... 33 5.7
UniRef50_A7ATC7 Cluster: Variant erythrocyte surface antigen-1, ... 33 5.7
UniRef50_UPI0000E816CC Cluster: PREDICTED: hypothetical protein;... 33 7.5
UniRef50_Q0RX70 Cluster: Possible transposase, N-terminal; n=1; ... 33 7.5
UniRef50_P28739 Cluster: Kinesin-like protein klpA; n=8; Eurotio... 33 7.5
UniRef50_Q6QI31 Cluster: LRRGT00177; n=2; Rattus norvegicus|Rep:... 33 9.9
UniRef50_O23072 Cluster: A_IG005I10.16 protein; n=8; Arabidopsis... 33 9.9
>UniRef50_P49821 Cluster: NADH dehydrogenase [ubiquinone]
flavoprotein 1, mitochondrial precursor; n=215; cellular
organisms|Rep: NADH dehydrogenase [ubiquinone]
flavoprotein 1, mitochondrial precursor - Homo sapiens
(Human)
Length = 464
Score = 220 bits (538), Expect = 3e-56
Identities = 100/125 (80%), Positives = 108/125 (86%)
Frame = -3
Query: 546 DFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIY 367
DFD LV AQT LGTAA+IVMD+STDIVKAIARLI FYKHESCGQCTPCREGV WMNK++
Sbjct: 338 DFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMA 397
Query: 366 RFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQEYSAAH 187
RFV G+A P EID LWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELE RMQ ++ H
Sbjct: 398 RFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRFAQQH 457
Query: 186 GPSKA 172
+A
Sbjct: 458 QARQA 462
Score = 54.4 bits (125), Expect = 3e-06
Identities = 24/33 (72%), Positives = 27/33 (81%)
Frame = -1
Query: 644 GGVXRGXENLXAIIPGGSLTPXIPKNVCETVLM 546
GGV G +NL A+IPGGS TP IPK+VCETVLM
Sbjct: 305 GGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLM 337
>UniRef50_A1ZAW7 Cluster: CG11423-PA; n=2; Drosophila
melanogaster|Rep: CG11423-PA - Drosophila melanogaster
(Fruit fly)
Length = 702
Score = 190 bits (464), Expect = 2e-47
Identities = 87/141 (61%), Positives = 111/141 (78%)
Frame = -3
Query: 585 PXHTQERXRDSVDDFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTP 406
P T+E ++ D+D L+A ++S+GT A+IVM+K TDI+KAIARL FYKHESCGQCTP
Sbjct: 548 PCITKEHASSAIHDYDGLMAVRSSMGTGALIVMNKDTDIIKAIARLSAFYKHESCGQCTP 607
Query: 405 CREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRP 226
CREG+ W+N I++RFV G A EIDML+E++KQIEGHTICAL DGAAWP QGLIR+FRP
Sbjct: 608 CREGLHWVNMIMHRFVTGQAQIAEIDMLFELTKQIEGHTICALADGAAWPPQGLIRNFRP 667
Query: 225 ELERRMQEYSAAHGPSKAERL 163
+E R+++ AA +KAE L
Sbjct: 668 VIEERIKK-RAAEDQAKAEAL 687
Score = 36.7 bits (81), Expect = 0.61
Identities = 17/25 (68%), Positives = 18/25 (72%)
Frame = -1
Query: 644 GGVXRGXENLXAIIPGGSLTPXIPK 570
GGV G +NL AIIPGGS TP I K
Sbjct: 528 GGVIGGWDNLLAIIPGGSSTPCITK 552
>UniRef50_Q4UKA6 Cluster: NADH-quinone oxidoreductase subunit F;
n=11; Proteobacteria|Rep: NADH-quinone oxidoreductase
subunit F - Rickettsia felis (Rickettsia azadi)
Length = 422
Score = 174 bits (423), Expect = 2e-42
Identities = 78/119 (65%), Positives = 92/119 (77%)
Frame = -3
Query: 546 DFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIY 367
DFD L A + LGT IIVMDKSTDI+ AIARL FY HESCGQCTPCREG WM +++
Sbjct: 303 DFDSLRTAGSGLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMWRVMM 362
Query: 366 RFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQEYSAA 190
R V GNA EID L ++K+IEGHTICALGD AAWP+QGLIRHFR E+E R++ +S+A
Sbjct: 363 RLVKGNAQKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEERIKGWSSA 421
Score = 43.6 bits (98), Expect = 0.005
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = -1
Query: 644 GGVXRGXENLXAIIPGGSLTPXIPKNVCE 558
GGV G +NL AIIPGGS P +PK++CE
Sbjct: 271 GGVRGGWDNLKAIIPGGSSVPLLPKSLCE 299
>UniRef50_Q6MDR1 Cluster: Probable NADH-ubiquinone oxidoreductase
chain F; n=1; Candidatus Protochlamydia amoebophila
UWE25|Rep: Probable NADH-ubiquinone oxidoreductase chain
F - Protochlamydia amoebophila (strain UWE25)
Length = 432
Score = 118 bits (284), Expect = 2e-25
Identities = 58/137 (42%), Positives = 82/137 (59%)
Frame = -3
Query: 570 ERXRDSVDDFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGV 391
ER D+ DFD + A ++ LGTA+IIVMD STD+VK RL+ FY++ESCG+CTPCREG
Sbjct: 293 ERDLDTPMDFDSVAAKKSMLGTASIIVMDDSTDMVKVANRLMEFYQNESCGKCTPCREGT 352
Query: 390 SWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERR 211
W +I+ R + G + ++ + I +Q+E + C L GAA P+ IR FR E E
Sbjct: 353 RWTKQILTRILAGRGTVGDLKTIERICQQMEMDSFCPLAPGAALPIVSAIREFRGEFESY 412
Query: 210 MQEYSAAHGPSKAERLY 160
+ A P + + Y
Sbjct: 413 IMRNIHADKPPEMKITY 429
>UniRef50_P56913 Cluster: NADH-quinone oxidoreductase subunit F 2;
n=100; Proteobacteria|Rep: NADH-quinone oxidoreductase
subunit F 2 - Rhizobium meliloti (Sinorhizobium
meliloti)
Length = 421
Score = 118 bits (283), Expect = 2e-25
Identities = 52/115 (45%), Positives = 75/115 (65%)
Frame = -3
Query: 546 DFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIY 367
DFD L AA + LG+A ++V+D ST +VK R+I F+ HESCG+CTPCREG+ W K++
Sbjct: 301 DFDSLTAAGSMLGSAGVVVIDDSTCMVKLATRIIEFFHHESCGKCTPCREGLDWTVKVLR 360
Query: 366 RFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQE 202
R G +++ L + K I G+T CALGDGAA ++ ++HFR E ++E
Sbjct: 361 RIEAGEGETGDLEQLEMLCKGIFGNTFCALGDGAAMGLRAALKHFRAEFVAHIEE 415
>UniRef50_Q8F7Q4 Cluster: NADH dehydrogenase I, F subunit; n=9;
Bacteria|Rep: NADH dehydrogenase I, F subunit -
Leptospira interrogans
Length = 443
Score = 114 bits (275), Expect = 2e-24
Identities = 50/128 (39%), Positives = 80/128 (62%), Gaps = 1/128 (0%)
Frame = -3
Query: 585 PXHTQERXRDSVDDFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTP 406
P T E + + DF+ + A +T LG+ A+IV+ + TDIV+ R FY HESCGQCTP
Sbjct: 289 PILTAEECKTANMDFESMAAHKTMLGSGAVIVLAEGTDIVETTYRFARFYAHESCGQCTP 348
Query: 405 CREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIE-GHTICALGDGAAWPVQGLIRHFR 229
CREG W+ I+Y+ +G + ++ID+++ +S+ +E G TIC L D V+ ++ FR
Sbjct: 349 CREGTHWVRDILYKIREGEGTTEDIDLIFSLSRNMEGGTTICPLSDACVGAVRPALQKFR 408
Query: 228 PELERRMQ 205
E + +++
Sbjct: 409 SEFDAKLK 416
>UniRef50_A7CUG0 Cluster: NADH dehydrogenase; n=1; Opitutaceae
bacterium TAV2|Rep: NADH dehydrogenase - Opitutaceae
bacterium TAV2
Length = 478
Score = 114 bits (274), Expect = 3e-24
Identities = 49/104 (47%), Positives = 68/104 (65%)
Frame = -3
Query: 546 DFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIY 367
DFD L A + G+ +IVMD S ++V+A+A + FY HESCGQCTPCREG WM KI
Sbjct: 337 DFDTLAACGSMGGSGGVIVMDDSVNMVEALANINAFYSHESCGQCTPCREGSLWMKKITA 396
Query: 366 RFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRH 235
R V G A ++ +L ++ QI G TICA+G+ +WP Q +++
Sbjct: 397 RMVHGTARAEDAALLKGVADQIPGRTICAMGEACSWPTQSFLQN 440
>UniRef50_Q9XAQ9 Cluster: NADH-quinone oxidoreductase subunit F;
n=32; Bacteria|Rep: NADH-quinone oxidoreductase subunit
F - Streptomyces coelicolor
Length = 449
Score = 108 bits (259), Expect = 2e-22
Identities = 52/138 (37%), Positives = 79/138 (57%)
Frame = -3
Query: 585 PXHTQERXRDSVDDFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTP 406
P T E D D++ + AA + LGT A+ D++T +V+A+ R FY HESCG+CTP
Sbjct: 302 PMFTDEHL-DVPLDYEGVGAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTP 360
Query: 405 CREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRP 226
CREG W+ +++ G ++D L +I+ I G + CALGDGAA P+ +++FR
Sbjct: 361 CREGTYWLVQLLRDIEAGKGQMSDLDKLNDIADNINGKSFCALGDGAASPIFSSLKYFRE 420
Query: 225 ELERRMQEYSAAHGPSKA 172
E E + P+K+
Sbjct: 421 EYEEHITGRGCPFDPAKS 438
>UniRef50_Q1IS37 Cluster: NADH-quinone oxidoreductase, F subunit;
n=9; Bacteria|Rep: NADH-quinone oxidoreductase, F
subunit - Acidobacteria bacterium (strain Ellin345)
Length = 439
Score = 107 bits (258), Expect = 2e-22
Identities = 49/118 (41%), Positives = 67/118 (56%)
Frame = -3
Query: 558 DSVDDFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMN 379
D DFD ++ A + LG+ ++V+D T IVK R I FY+HESCG C PCREG W+
Sbjct: 303 DIAMDFDSVMKAGSMLGSGGVVVLDDRTCIVKFALRTIKFYQHESCGWCIPCREGTDWLK 362
Query: 378 KIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQ 205
K + RF G K+ID + ++ + G T C LGD AA P + FR E E ++
Sbjct: 363 KTLTRFHAGGGIKKDIDNIKYLADNMLGRTFCPLGDAAAMPTIAFVEKFRKEFEDHLE 420
>UniRef50_A1ALP4 Cluster: NADH dehydrogenase; n=1; Pelobacter
propionicus DSM 2379|Rep: NADH dehydrogenase -
Pelobacter propionicus (strain DSM 2379)
Length = 427
Score = 106 bits (255), Expect = 5e-22
Identities = 50/110 (45%), Positives = 68/110 (61%)
Frame = -3
Query: 546 DFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIY 367
D + L +T LG+ +IV+ + +V+ + L FY HESCGQCTPCREG +WMN II
Sbjct: 302 DAECLSTYRTMLGSGGVIVIAEGVCMVRLLHTLSRFYAHESCGQCTPCREGSAWMNDIIS 361
Query: 366 RFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELE 217
R V G +++ L I+K I G+T+CALGD A+ PV I FR E +
Sbjct: 362 RIVAGKGVKGDLESLERITKGIMGNTVCALGDAASMPVINFITKFRAEFD 411
>UniRef50_Q2S5I8 Cluster: Respiratory-chain NADH dehydrogenase 51 Kd
subunit family; n=2; Sphingobacteriales genera incertae
sedis|Rep: Respiratory-chain NADH dehydrogenase 51 Kd
subunit family - Salinibacter ruber (strain DSM 13855)
Length = 464
Score = 104 bits (249), Expect = 3e-21
Identities = 45/103 (43%), Positives = 66/103 (64%), Gaps = 1/103 (0%)
Frame = -3
Query: 510 GTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEI 331
GT +V+D+ TD+V + R+ FY+ E+CGQCTPCREG SW+ KI+ R +G ++I
Sbjct: 340 GTFCPLVLDEETDMVSFLRRVAHFYQDETCGQCTPCREGTSWLEKILARIDEGEGRMRDI 399
Query: 330 DMLWEISKQIE-GHTICALGDGAAWPVQGLIRHFRPELERRMQ 205
D+L E+ ++ G TICA DGA PV+ ++ FR E + Q
Sbjct: 400 DLLLELCDNMDGGRTICAFADGAVGPVRATVKRFREEFAAKCQ 442
>UniRef50_Q1IZW8 Cluster: NADH-quinone oxidoreductase, F subunit;
n=1; Deinococcus geothermalis DSM 11300|Rep:
NADH-quinone oxidoreductase, F subunit - Deinococcus
geothermalis (strain DSM 11300)
Length = 446
Score = 99 bits (238), Expect = 6e-20
Identities = 46/123 (37%), Positives = 72/123 (58%), Gaps = 1/123 (0%)
Frame = -3
Query: 570 ERXRDSVDDFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGV 391
+R D+ D++ + AA + LGT + ++ K+ IV L+ FY HESCG+CTPCREG+
Sbjct: 309 DRTLDTPMDYESVAAAGSMLGTGGVTLIPKADCIVNVTWNLVRFYAHESCGKCTPCREGI 368
Query: 390 S-WMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELER 214
S WM ++ + V G+ P ++ ++ ++S I G + CAL D PV I+ FR E +
Sbjct: 369 SGWMVRMYEKLVRGHGQPGDVQLILDMSDNIGGRSFCALADACLGPVLSSIKLFREEYDT 428
Query: 213 RMQ 205
Q
Sbjct: 429 LAQ 431
>UniRef50_A6FCN1 Cluster: NuoF2 NADH I CHAIN F; n=1; Moritella sp.
PE36|Rep: NuoF2 NADH I CHAIN F - Moritella sp. PE36
Length = 425
Score = 99.1 bits (236), Expect = 1e-19
Identities = 41/110 (37%), Positives = 66/110 (60%)
Frame = -3
Query: 546 DFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIY 367
+F L A + +G+AA+I +D++ I R+ F+ HESCG+C PCREG+ W +KI+
Sbjct: 300 NFADLATADSMMGSAAVIALDETASIPAVGRRIAEFFSHESCGKCAPCREGLPWASKILN 359
Query: 366 RFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELE 217
R G P +++ L I + ++ CALG GAAW ++ ++HF E +
Sbjct: 360 RIESGQGRPGDLEQLQVICGGVFNNSFCALGVGAAWAIRATLKHFPHEYD 409
>UniRef50_A5UVG4 Cluster: NADH-quinone oxidoreductase, F subunit;
n=9; Bacteria|Rep: NADH-quinone oxidoreductase, F
subunit - Roseiflexus sp. RS-1
Length = 449
Score = 98.7 bits (235), Expect = 1e-19
Identities = 41/119 (34%), Positives = 73/119 (61%)
Frame = -3
Query: 558 DSVDDFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMN 379
D D++ L A + LG+ +IV+D+S V+ ++ F+KHESCG+CTPCREG ++
Sbjct: 317 DVTMDYEALAAKGSMLGSGGVIVLDESVSAVEVAYKMDEFFKHESCGKCTPCREGTYFLV 376
Query: 378 KIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQE 202
K+++R G+ ++I +L ++ Q+ G+ C LG+ A P++ +R F E E+ + +
Sbjct: 377 KVLHRITHGHGRKEDIPLLHDVYHQMAGNCFCLLGESAVVPIRSALRLFPHEFEQAIAQ 435
>UniRef50_Q56222 Cluster: NADH-quinone oxidoreductase subunit 1;
n=6; Bacteria|Rep: NADH-quinone oxidoreductase subunit 1
- Thermus thermophilus (strain HB8 / ATCC 27634 / DSM
579)
Length = 438
Score = 97.1 bits (231), Expect = 4e-19
Identities = 48/137 (35%), Positives = 73/137 (53%), Gaps = 1/137 (0%)
Frame = -3
Query: 585 PXHTQERXRDSVDDFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTP 406
P E D+ ++ L A + LGT +I++ + +V A+ L FY HESCG+CTP
Sbjct: 299 PLPFTEEVLDTPMSYEHLQAKGSMLGTGGVILIPERVSMVDAMWNLTRFYAHESCGKCTP 358
Query: 405 CREGVS-WMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFR 229
CREGV+ +M + + G K+++ L + IEG + C L D A WPV+G +RHF+
Sbjct: 359 CREGVAGFMVNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCPLADAAVWPVKGSLRHFK 418
Query: 228 PELERRMQEYSAAHGPS 178
+ +E PS
Sbjct: 419 DQYLALAREKRPVPRPS 435
>UniRef50_Q2AG83 Cluster: 4Fe-4S ferredoxin, iron-sulfur
binding:Respiratory-chain NADH dehydrogenase domain, 51
kDa subunit; n=4; Bacteria|Rep: 4Fe-4S ferredoxin,
iron-sulfur binding:Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit - Halothermothrix orenii H 168
Length = 632
Score = 91.5 bits (217), Expect = 2e-17
Identities = 47/138 (34%), Positives = 80/138 (57%), Gaps = 1/138 (0%)
Frame = -3
Query: 570 ERXRDSVDDFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIM-FYKHESCGQCTPCREG 394
E D DFD L +G+ ++VMD++T +V+ +AR M F ++ESCG+C CREG
Sbjct: 441 EEHLDMPMDFDSLQEVGAMIGSGGLVVMDENTCMVE-VARFFMEFTQNESCGKCVLCREG 499
Query: 393 VSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELER 214
M KI+ R V+G + +++D+L E++ ++ ++C LG A PV +++FR E E
Sbjct: 500 TKQMLKILERIVEGKGTMEDLDLLEELALAVKDGSLCGLGKTAPNPVLTTLKYFRDEYEA 559
Query: 213 RMQEYSAAHGPSKAERLY 160
+++ G +A + Y
Sbjct: 560 HVKDKKCPAGVCEALKSY 577
>UniRef50_A0RMD3 Cluster: NADH-quinone oxidoreductase chain f; n=1;
Campylobacter fetus subsp. fetus 82-40|Rep: NADH-quinone
oxidoreductase chain f - Campylobacter fetus subsp.
fetus (strain 82-40)
Length = 406
Score = 91.5 bits (217), Expect = 2e-17
Identities = 39/118 (33%), Positives = 66/118 (55%)
Frame = -3
Query: 576 TQERXRDSVDDFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCRE 397
T++ + D++ L +++LGT ++V D + + + + L+ FY ESCGQCTPCRE
Sbjct: 280 TKDEVLKATLDYESLKEFKSALGTGGMMVFDDTISMPEVLLNLLEFYTEESCGQCTPCRE 339
Query: 396 GVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPE 223
G W +++ + V+G S +++D L +IS ++G TIC + G I F E
Sbjct: 340 GCGWALRVVKKIVEGEGSLRDLDTLKDISYMLDGKTICVFAPAVKDVIMGFITKFENE 397
>UniRef50_Q2LQE7 Cluster: NADH-quinone oxidoreductase chain F; n=1;
Syntrophus aciditrophicus SB|Rep: NADH-quinone
oxidoreductase chain F - Syntrophus aciditrophicus
(strain SB)
Length = 574
Score = 90.6 bits (215), Expect = 4e-17
Identities = 40/118 (33%), Positives = 63/118 (53%)
Frame = -3
Query: 570 ERXRDSVDDFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGV 391
E +D D+D T LG+ I+V+ + I + R I FY HESCG+C PCREG
Sbjct: 452 EELQDLTMDYDSCAKHGTGLGSGGIMVISEDFSIPELALRTIKFYAHESCGKCVPCREGS 511
Query: 390 SWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELE 217
+ KI+++ + G +I+ + I + G T+C G+ A P+Q ++ FR E +
Sbjct: 512 YTLVKILHKLLSGQGEAADIEKILGICNTVRGLTLCPTGEAFAVPIQAMVEKFRSEFD 569
>UniRef50_Q746S7 Cluster: NADH dehydrogenase I, F subunit; n=7;
Deltaproteobacteria|Rep: NADH dehydrogenase I, F subunit
- Geobacter sulfurreducens
Length = 423
Score = 89.8 bits (213), Expect = 6e-17
Identities = 47/126 (37%), Positives = 68/126 (53%)
Frame = -3
Query: 585 PXHTQERXRDSVDDFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTP 406
P T+E +D FD + A + LGT I+V D++T +V A L+ FY ESCG CTP
Sbjct: 289 PFFTREHWNVPMD-FDAVARAGSRLGTGGIVVFDRNTCMVAATLNLVSFYARESCGWCTP 347
Query: 405 CREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRP 226
CREG+ ++ ++ R G + I +L E Q + C L GA PV+GL+R F
Sbjct: 348 CREGLPFVKDVLARIEAGAGREEHIAILRE-HVQYLNYAFCPLAPGAMGPVEGLLRLFED 406
Query: 225 ELERRM 208
E+ +
Sbjct: 407 EIREHI 412
>UniRef50_Q2C5T6 Cluster: NADH dehydrogenase I, F subunit; n=2;
Vibrionaceae|Rep: NADH dehydrogenase I, F subunit -
Photobacterium sp. SKA34
Length = 427
Score = 89.8 bits (213), Expect = 6e-17
Identities = 40/120 (33%), Positives = 67/120 (55%)
Frame = -3
Query: 546 DFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIY 367
D+D + LGT IIVMD + + + L F+ ESCG CTPCR+G+ ++ ++
Sbjct: 299 DWDGPATVGSRLGTGGIIVMDDAICPIDFMINLTEFFARESCGYCTPCRDGLPYVVHVLK 358
Query: 366 RFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQEYSAAH 187
+F G A+ K++D+L E+ + I +T CAL GA P+ ++HF+ + ++ H
Sbjct: 359 KFETGEATSKDLDLLHELCETIYPNTFCALAPGALMPIMTGLKHFKHVFDSHIEGQRCTH 418
>UniRef50_Q2LYA9 Cluster: NADH:ubiquinone oxidoreductase,
NADH-binding subunit; n=3; cellular organisms|Rep:
NADH:ubiquinone oxidoreductase, NADH-binding subunit -
Syntrophus aciditrophicus (strain SB)
Length = 637
Score = 88.6 bits (210), Expect = 1e-16
Identities = 45/125 (36%), Positives = 68/125 (54%)
Frame = -3
Query: 546 DFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIY 367
DFD L A + +G+ +IVMD T +V I F ESCG+C PCREG+ MN+I+
Sbjct: 454 DFDSLWEAGSMMGSGGMIVMDDKTCMVDIARYFIEFLVSESCGKCVPCREGIYRMNEILQ 513
Query: 366 RFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQEYSAAH 187
G ++++L +++ I+ ++CALG A PV IR+FR E + ++
Sbjct: 514 DICAGKGRRGDLELLGRMAEAIKDGSLCALGGSAPNPVLSTIRYFRSEYDAHIRSKKCPA 573
Query: 186 GPSKA 172
G KA
Sbjct: 574 GVCKA 578
>UniRef50_Q6AQG1 Cluster: Probable NADP-reducing hydrogenase, 51 kDa
subunit; n=1; Desulfotalea psychrophila|Rep: Probable
NADP-reducing hydrogenase, 51 kDa subunit - Desulfotalea
psychrophila
Length = 634
Score = 87.4 bits (207), Expect = 3e-16
Identities = 42/119 (35%), Positives = 68/119 (57%)
Frame = -3
Query: 558 DSVDDFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMN 379
D+ D+D LV+A +G+ ++VMD+ST +V + F + ESCGQCT C+ G M
Sbjct: 438 DTPVDYDSLVSAGAMMGSGGLVVMDESTCMVDIARYFLDFTQKESCGQCTLCKLGTKQML 497
Query: 378 KIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQE 202
I+ V G +I++L E+ + + ++C LG AA PV I++FR E E +++
Sbjct: 498 NILEDIVAGRGKEGDIELLLEVGEAVNAGSLCGLGKSAANPVLTTIKYFRDEYEAHIRD 556
>UniRef50_Q8RBC9 Cluster: NADH:ubiquinone oxidoreductase,
NADH-binding (51 kD) subunit; n=11; Bacteria|Rep:
NADH:ubiquinone oxidoreductase, NADH-binding (51 kD)
subunit - Thermoanaerobacter tengcongensis
Length = 596
Score = 85.0 bits (201), Expect = 2e-15
Identities = 40/119 (33%), Positives = 65/119 (54%)
Frame = -3
Query: 558 DSVDDFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMN 379
D+ D+D L +A +G+ ++VMD+ T +V + F ESCG+C PCR G M
Sbjct: 409 DTPIDYDSLTSAGAMMGSGGLVVMDEDTCMVNVAKFFLEFTVDESCGKCAPCRIGTKRML 468
Query: 378 KIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQE 202
+++ + G +I+ L E++K I+ +C LG A PV +R+FR E E ++E
Sbjct: 469 ELLDKITSGKGEEGDIEKLEELAKTIKATALCGLGQTAPNPVLSTLRYFRHEYEAHIKE 527
>UniRef50_P74024 Cluster: Hydrogenase subunit; n=13; Bacteria|Rep:
Hydrogenase subunit - Synechocystis sp. (strain PCC
6803)
Length = 533
Score = 85.0 bits (201), Expect = 2e-15
Identities = 40/118 (33%), Positives = 70/118 (59%)
Frame = -3
Query: 558 DSVDDFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMN 379
D+ ++D L+A T +G+ +IVMD+ST++V + F K ESCG+C PCR G +
Sbjct: 415 DTPIEYDTLLALGTMMGSGGMIVMDESTNMVDVAQFYMDFCKSESCGKCIPCRAGTVQLY 474
Query: 378 KIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQ 205
++ RF++G A+ +++ L + ++ ++C LG A PV +R+FR E E ++
Sbjct: 475 DLLTRFLEGEATQEDLIKLENLCHMVKETSLCGLGMSAPNPVISTLRYFRHEYEELLK 532
>UniRef50_Q2LS97 Cluster: NADH-quinone oxidoreductase chain F; n=2;
Syntrophus aciditrophicus SB|Rep: NADH-quinone
oxidoreductase chain F - Syntrophus aciditrophicus
(strain SB)
Length = 638
Score = 84.6 bits (200), Expect = 2e-15
Identities = 36/111 (32%), Positives = 67/111 (60%)
Frame = -3
Query: 546 DFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIY 367
D D + A +LG+ ++V D+ T V + ++ F++HESCGQC PCR G ++ +
Sbjct: 507 DIDSTIKAGVTLGSGVVLVCDEDTCPVDFLLDVLNFFEHESCGQCVPCRVGTRQLHHLAR 566
Query: 366 RFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELER 214
+F G A P ++D++ E +K ++ +++CALG P+ ++++FR + R
Sbjct: 567 KFATGTAVPGDLDLMVEKAKLMK-NSLCALGQSPILPITTMLKYFREDFLR 616
>UniRef50_A4MHV7 Cluster: NADH dehydrogenase; n=5; Bacteria|Rep:
NADH dehydrogenase - Geobacter bemidjiensis Bem
Length = 593
Score = 84.6 bits (200), Expect = 2e-15
Identities = 39/114 (34%), Positives = 64/114 (56%)
Frame = -3
Query: 558 DSVDDFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMN 379
D+ D+D L+ A +G+ ++VMD++T +V + F K ESCG+C PCR G+ M
Sbjct: 408 DTPVDYDSLIKAGAMMGSGGLVVMDETTCMVDVARFFLTFTKMESCGKCVPCRIGLKAML 467
Query: 378 KIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELE 217
I+ + +G +ID L E+ I+ ++C LG A P+ +++FR E E
Sbjct: 468 DILEKITEGRGEMADIDTLLEMGATIKKASLCGLGQTAPNPILSTVKYFRNEYE 521
>UniRef50_A1Z9Z7 Cluster: CG8102-PA, isoform A; n=4; Sophophora|Rep:
CG8102-PA, isoform A - Drosophila melanogaster (Fruit
fly)
Length = 481
Score = 84.2 bits (199), Expect = 3e-15
Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Frame = -3
Query: 546 DFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIY 367
DFD L A + G A+IVM K D + + R I F++ +C QC+ CR+G W+ +I
Sbjct: 361 DFDSLTDAGSGFGCGAVIVMTKDCDPLAIMLRSIQFFEKHTCKQCSYCRDGAIWLPEIFA 420
Query: 366 RFVDGNASPKEIDMLWEIS-KQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQEYS 196
RFV G P EID I+ K ICAL + L+R F ++E R+ +Y+
Sbjct: 421 RFVKGQTHPHEIDWTLVIADKMRNSKPICALAYSQVSVAESLVRMFSRKIEERLLKYA 478
Score = 33.5 bits (73), Expect = 5.7
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -1
Query: 644 GGVXRGXENLXAIIPGGSLTPXIPKNVCETVLM 546
GGV G +NL A+ PGG TP + + VLM
Sbjct: 328 GGVKGGWDNLAAVFPGGLSTPLLDPSTAGKVLM 360
>UniRef50_A5FXJ6 Cluster: NADH dehydrogenase; n=1; Acidiphilium
cryptum JF-5|Rep: NADH dehydrogenase - Acidiphilium
cryptum (strain JF-5)
Length = 434
Score = 82.6 bits (195), Expect = 9e-15
Identities = 41/116 (35%), Positives = 63/116 (54%), Gaps = 1/116 (0%)
Frame = -3
Query: 546 DFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIY 367
DFD + + LGTA I+V+D+ V + + F+ ESCG CTPCR+G+ W+ +I+
Sbjct: 306 DFDSVGKIGSWLGTANILVLDQKRCPVGLLRNIEHFFAQESCGWCTPCRDGLPWVERILT 365
Query: 366 RFVDGNASPKEIDML-WEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQE 202
G P +I++L + G T C L GA P++ ++ FR E ER + E
Sbjct: 366 ALEAGEGEPDDIELLAHHVDFLGPGRTFCDLAPGAMAPLRSGLKFFREEFERHVSE 421
>UniRef50_A2DV30 Cluster: Respiratory-chain NADH dehydrogenase 51 Kd
subunit family protein; n=1; Trichomonas vaginalis
G3|Rep: Respiratory-chain NADH dehydrogenase 51 Kd
subunit family protein - Trichomonas vaginalis G3
Length = 425
Score = 82.2 bits (194), Expect = 1e-14
Identities = 39/125 (31%), Positives = 72/125 (57%)
Frame = -3
Query: 585 PXHTQERXRDSVDDFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTP 406
P T+E+ ++++ FD + + LGT +++V+D + DIV+ R+ FYK E CGQC
Sbjct: 299 PPITKEQAKNAILGFDEMSKIGSGLGTGSLVVIDNTADIVEVYRRIANFYKDECCGQCKQ 358
Query: 405 CREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRP 226
C EG M +I + G + ++ L E++ ++ + IC+ GA+ P++G ++ F+
Sbjct: 359 CVEGTETMAEIFDKIARGKGTKDDVKHLEEVAFGMKKY-ICSFSVGASDPIRGFLKVFKN 417
Query: 225 ELERR 211
+L R
Sbjct: 418 KLLER 422
>UniRef50_Q9WY70 Cluster: NADP-reducing hydrogenase, subunit C; n=9;
Bacteria|Rep: NADP-reducing hydrogenase, subunit C -
Thermotoga maritima
Length = 545
Score = 79.8 bits (188), Expect = 7e-14
Identities = 36/110 (32%), Positives = 59/110 (53%)
Frame = -3
Query: 546 DFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIY 367
DFD SLG+ I+V D++ +V ++ F++HESCG+CTPCREG + I+
Sbjct: 407 DFDSYAKYGVSLGSGVILVADETHCVVDLALTVMRFFEHESCGKCTPCREGTRMIVNILE 466
Query: 366 RFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELE 217
R G +++D L EI++ + C LG P+ ++ +F E +
Sbjct: 467 RISRGEGKKEDLDTLREIARNAGETSFCGLGQSIPVPLLSIVDNFEEEFK 516
>UniRef50_Q8ABI5 Cluster: NADH:ubiquinone oxidoreductase subunit;
n=91; cellular organisms|Rep: NADH:ubiquinone
oxidoreductase subunit - Bacteroides thetaiotaomicron
Length = 635
Score = 79.8 bits (188), Expect = 7e-14
Identities = 40/117 (34%), Positives = 69/117 (58%), Gaps = 1/117 (0%)
Frame = -3
Query: 570 ERXRDSVDDFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIM-FYKHESCGQCTPCREG 394
E+ D+ DFD L+AA + +G+ +IVMD+ D + ++AR + F ESCG+CTPCR G
Sbjct: 444 EKHLDTPIDFDNLLAAGSMMGSGGMIVMDED-DCMVSVARFYLDFTVEESCGKCTPCRIG 502
Query: 393 VSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPE 223
+ +++ + +G + K++D L + + I+ +C LG + PV + +FR E
Sbjct: 503 NKRLLELLNKITEGRGTEKDLDTLATLGRVIKDTALCGLGQTSPNPVLSTLDNFRDE 559
>UniRef50_A3ETZ6 Cluster: NADH ubiquinone oxidoreductase; n=1;
Leptospirillum sp. Group II UBA|Rep: NADH ubiquinone
oxidoreductase - Leptospirillum sp. Group II UBA
Length = 627
Score = 79.4 bits (187), Expect = 9e-14
Identities = 47/161 (29%), Positives = 74/161 (45%)
Frame = -3
Query: 546 DFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIY 367
D+ + LG+A++IVMD S +V + F HESCGQCTPCR+G + +I+
Sbjct: 475 DYPSIAEVGAFLGSASVIVMDDSVCMVDLAYWIAAFSHHESCGQCTPCRDGTEDVYEILL 534
Query: 366 RFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQEYSAAH 187
+ V G P +D+L I + +IC LG A + +F E + ++ +
Sbjct: 535 KIVQGEGKPAYLDLLKSIGTYMREASICGLGQSAPNIPLSSMEYFEDEWKAHIENHVCPA 594
Query: 186 GPSKAERLY**CNTRRTSTLHFESIEGTIVQRKMQRDHFSV 64
G C+ RR L F + ++ + HFSV
Sbjct: 595 GV---------CSMRRDGILLFPPRRSRGIVAELPQMHFSV 626
>UniRef50_Q3ZXP7 Cluster: Hydrogenase subunit HymB; n=7;
Bacteria|Rep: Hydrogenase subunit HymB - Dehalococcoides
sp. (strain CBDB1)
Length = 640
Score = 79.0 bits (186), Expect = 1e-13
Identities = 42/133 (31%), Positives = 68/133 (51%)
Frame = -3
Query: 570 ERXRDSVDDFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGV 391
E DS D+D L + +G+ +I+MD+ T +V I F ESCG+C PCREG+
Sbjct: 426 ENLLDSPVDYDALSKLGSMVGSGGLIIMDEETCMVDIARYFINFLSDESCGKCLPCREGL 485
Query: 390 SWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERR 211
+ I+ R +G + ++D L ++S + +CALG A P+ +++FR E
Sbjct: 486 RQLVDILTRITEGKGTMVDMDTLEDLSGVMSEACLCALGQQAPNPLLTTLKYFRHEYIDH 545
Query: 210 MQEYSAAHGPSKA 172
++ G KA
Sbjct: 546 IKNKHCEAGVCKA 558
>UniRef50_A3EW61 Cluster: NADH ubiquinone oxidoreductase; n=1;
Leptospirillum sp. Group II UBA|Rep: NADH ubiquinone
oxidoreductase - Leptospirillum sp. Group II UBA
Length = 453
Score = 79.0 bits (186), Expect = 1e-13
Identities = 38/119 (31%), Positives = 63/119 (52%)
Frame = -3
Query: 558 DSVDDFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMN 379
D+ D+D L A + +G+ +IV+ V + FY+ SCGQC PCR G ++
Sbjct: 312 DTPLDYDALRALGSGIGSGGVIVLSDKDCPVATARQFAAFYETGSCGQCPPCRIGTENLH 371
Query: 378 KIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQE 202
+I+ F +G AS + + + IS I+G C L +A+ V+ L+RHF E + + +
Sbjct: 372 EILELFENGKASRENVQRILRISDMIKGRGNCGLITASAYSVESLVRHFPEEFQSHLDD 430
>UniRef50_Q835I8 Cluster: NAD-dependent formate dehydrogenase, beta
subunit, putative; n=1; Enterococcus faecalis|Rep:
NAD-dependent formate dehydrogenase, beta subunit,
putative - Enterococcus faecalis (Streptococcus
faecalis)
Length = 417
Score = 77.8 bits (183), Expect = 3e-13
Identities = 36/115 (31%), Positives = 64/115 (55%)
Frame = -3
Query: 561 RDSVDDFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWM 382
RD + ++ L A S+G+ AI+VMD S ++V + + F+ HESCG+CTPCR G + +
Sbjct: 288 RDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRI 347
Query: 381 NKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELE 217
+++ +F A+ ++ L ++ + + C LG A P++ + F E E
Sbjct: 348 LELLSKFNRNEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFPEEFE 402
>UniRef50_O27592 Cluster: NADP-reducing hydrogenase, subunit C; n=4;
cellular organisms|Rep: NADP-reducing hydrogenase,
subunit C - Methanobacterium thermoautotrophicum
Length = 630
Score = 77.0 bits (181), Expect = 5e-13
Identities = 34/112 (30%), Positives = 63/112 (56%)
Frame = -3
Query: 558 DSVDDFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMN 379
D+ D+D L +A +G+ ++V+ T +V+ + F + ESCG+C PCR G M
Sbjct: 425 DTGIDYDSLTSAGAIMGSGGLVVLSDRTCMVELARYFLEFTQRESCGKCVPCRVGTRQML 484
Query: 378 KIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPE 223
I+ V+G+ P++ D+L ++++ + ++C LG + PV +R+F E
Sbjct: 485 MILNDIVEGSGRPEDPDILRDVAESVRAASLCGLGQTSPNPVLTTLRYFEDE 536
>UniRef50_Q47HE6 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit:Respiratory-chain NADH dehydrogenase domain, 51
kDa subunit; n=1; Dechloromonas aromatica RCB|Rep: NADH
dehydrogenase (Ubiquinone), 24 kDa
subunit:Respiratory-chain NADH dehydrogenase domain, 51
kDa subunit - Dechloromonas aromatica (strain RCB)
Length = 632
Score = 76.6 bits (180), Expect = 6e-13
Identities = 35/115 (30%), Positives = 61/115 (53%)
Frame = -3
Query: 546 DFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIY 367
+FD ++ + A V + + D+ + + F++HESCG CTPCR G S + ++
Sbjct: 481 EFDRVIGFEDIPTAGAFTVFNNTRDMFEVARNYVHFFQHESCGFCTPCRVGTSLLKNLMD 540
Query: 366 RFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQE 202
+ +G SP + + ++++ ++ + C LG A PV I FRP ERRM +
Sbjct: 541 KLHNGVGSPYDFAEIEKLNQLLQSMSHCGLGHTACNPVLDTIERFRPAYERRMAQ 595
>UniRef50_Q6N1Z2 Cluster: NADH-ubiquinone dehydrogenase chain F;
n=8; Alphaproteobacteria|Rep: NADH-ubiquinone
dehydrogenase chain F - Rhodopseudomonas palustris
Length = 428
Score = 75.8 bits (178), Expect = 1e-12
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 2/107 (1%)
Frame = -3
Query: 546 DFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIY 367
DF A +SLGT A+IV+D V AI R + FY ESCG CTPCR+G+ W++K++
Sbjct: 305 DFTSTKKAGSSLGTGALIVLDDRACPVAAIGRHMRFYARESCGLCTPCRDGLPWVSKLLD 364
Query: 366 RFVDGNASPKEIDMLWE--ISKQIEGHTICALGDGAAWPVQGLIRHF 232
G + +I++L + G + C L GA P++ + F
Sbjct: 365 ALEAGKGTQGDIEVLHQHVALSGPSGRSYCDLNTGALTPLRSGLERF 411
>UniRef50_Q9I0J7 Cluster: NADH-quinone oxidoreductase subunit F;
n=78; Bacteria|Rep: NADH-quinone oxidoreductase subunit
F - Pseudomonas aeruginosa
Length = 448
Score = 74.9 bits (176), Expect = 2e-12
Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
Frame = -3
Query: 519 TSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASP 340
T +GT + +D S ++V + + F+ ESCG CTPCR+G+ W K++ G P
Sbjct: 329 TRMGTGLAMAVDDSINMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKLLRALERGEGQP 388
Query: 339 KEIDMLWEISKQI-EGHTICALGDGAAWPVQGLIRHFRPELERRM-QEYSAAHGPS 178
+++ L ++ + G T CA GA P+ +++FR E E + ++ SAA P+
Sbjct: 389 GDLETLEQLVNFLGPGKTFCAHAPGAVEPLGSALKYFRAEFEAGISRQPSAAPRPA 444
>UniRef50_A6GJI0 Cluster: Putative NADH dehydrogenase I chain F;
n=1; Plesiocystis pacifica SIR-1|Rep: Putative NADH
dehydrogenase I chain F - Plesiocystis pacifica SIR-1
Length = 503
Score = 74.5 bits (175), Expect = 2e-12
Identities = 35/110 (31%), Positives = 64/110 (58%)
Frame = -3
Query: 546 DFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIY 367
DF L + LG+A ++V++ + D+ A +F++ ESCGQC PCR G + I
Sbjct: 393 DFGGLAKLGSMLGSAGVVVLNDTVDMAVAARWQQIFFEDESCGQCAPCRIGCRVQRQAID 452
Query: 366 RFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELE 217
+F+D A P+ + + E++ +++ +IC LG A+ P+Q +++F E +
Sbjct: 453 KFLDARA-PESLGHVEEVAWEMDAGSICGLGMVASLPLQSAMKYFGEEFD 501
>UniRef50_A5FSK8 Cluster: NADH dehydrogenase; n=3;
Dehalococcoides|Rep: NADH dehydrogenase -
Dehalococcoides sp. BAV1
Length = 417
Score = 72.5 bits (170), Expect = 1e-11
Identities = 36/108 (33%), Positives = 57/108 (52%)
Frame = -3
Query: 546 DFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIY 367
DF L A T LG+ A+IV++ T +V + + F+ E CG+C+ CREG +I+
Sbjct: 296 DFKTLAKAGTMLGSGAVIVINSDTSMVNVASNVAHFFDEEGCGKCSICREGTRRAAEILS 355
Query: 366 RFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPE 223
RF G + E++ L E+ + ++ C LG A IR+F+ E
Sbjct: 356 RFSRGQGNRNELEWLLELHEVMKDTASCGLGQVALNVAASAIRNFKGE 403
>UniRef50_A6PMG7 Cluster: NADH dehydrogenase (Quinone) precursor;
n=1; Victivallis vadensis ATCC BAA-548|Rep: NADH
dehydrogenase (Quinone) precursor - Victivallis vadensis
ATCC BAA-548
Length = 573
Score = 70.9 bits (166), Expect = 3e-11
Identities = 36/119 (30%), Positives = 64/119 (53%)
Frame = -3
Query: 558 DSVDDFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMN 379
D+ D+D L +G+ +IV+ K +V+ + F ESCG+CT CR G + M
Sbjct: 385 DTPVDYDSLRKLGAIMGSGGMIVIGKDRCMVETARYFLDFTHRESCGKCTFCRVGTTRMY 444
Query: 378 KIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQE 202
+ + R V G S +++ +L ++ +I ++C LG A PV +R++R E E +++
Sbjct: 445 ETLERIVAGKGSMEDLALLEDLGPKIRMGSLCGLGQTAPNPVLATLRYYRHEYEAHVRD 503
>UniRef50_O66841 Cluster: NADH-quinone oxidoreductase subunit F;
n=2; Aquifex aeolicus|Rep: NADH-quinone oxidoreductase
subunit F - Aquifex aeolicus
Length = 426
Score = 70.1 bits (164), Expect = 5e-11
Identities = 32/99 (32%), Positives = 56/99 (56%)
Frame = -3
Query: 510 GTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEI 331
GT +IV+ + DIV+A ++ FY+HE+CGQCTPCR G ++ + G A+ ++
Sbjct: 318 GTGTVIVLTEEDDIVEAALKIAEFYEHETCGQCTPCRVGCYEQANLLEKIYKGEATEQDW 377
Query: 330 DMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELER 214
+ +++ I+ +IC LG A ++ + F E E+
Sbjct: 378 EGFDFVNRNIQPTSICGLGAVAGRLIRQTLEKFPEEWEK 416
>UniRef50_A7IMB3 Cluster: NADH dehydrogenase; n=3;
Proteobacteria|Rep: NADH dehydrogenase - Xanthobacter
sp. (strain Py2)
Length = 422
Score = 68.9 bits (161), Expect = 1e-10
Identities = 38/117 (32%), Positives = 57/117 (48%)
Frame = -3
Query: 567 RXRDSVDDFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVS 388
R D DFD + ++ LGT A+IV+ + T IV+ +A + F+ SCGQC C+ G
Sbjct: 299 RDLDVALDFDSVKRRKSRLGTGAMIVISEGTSIVRKVAEYVAFFASGSCGQCPSCKCGTF 358
Query: 387 WMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELE 217
M +++ R G + L + + + G CAL DGA V+ F E E
Sbjct: 359 QMARLLDRIATGRGVEADRQALDHLCRILPGSGRCALIDGAVTVVESSRHTFPDEYE 415
>UniRef50_A0NMW4 Cluster: NADH:ubiquinone oxidoreductase,
NADH-binding (51 kD) subunit; n=2; Proteobacteria|Rep:
NADH:ubiquinone oxidoreductase, NADH-binding (51 kD)
subunit - Stappia aggregata IAM 12614
Length = 626
Score = 68.1 bits (159), Expect = 2e-10
Identities = 33/90 (36%), Positives = 54/90 (60%)
Frame = -3
Query: 501 AIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDML 322
AIIV + ++++ + + F+ HESCG CTPCR G ++ K I +F G A+P++ID L
Sbjct: 492 AIIVFNGERNVLEIVEYYMSFFVHESCGYCTPCRVGNVFLQKAIQKFRKGLANPEDIDYL 551
Query: 321 WEISKQIEGHTICALGDGAAWPVQGLIRHF 232
++S I + C LG + PV +++F
Sbjct: 552 KDLSGTIIETSRCGLGMTSPNPVLTTLKNF 581
>UniRef50_Q51696 Cluster: Putative uncharacterized protein ORF2;
n=1; Brevundimonas diminuta|Rep: Putative
uncharacterized protein ORF2 - Brevundimonas diminuta
(Pseudomonas diminuta)
Length = 401
Score = 67.7 bits (158), Expect = 3e-10
Identities = 39/118 (33%), Positives = 57/118 (48%)
Frame = -3
Query: 558 DSVDDFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMN 379
D D L AA +SLG AAI S D+V A + F+ SC QC CR +
Sbjct: 284 DVAFDSASLRAAGSSLGCAAITAYAASDDLVAAARQRAAFFASASCEQCPQCRMQTQMLL 343
Query: 378 KIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQ 205
I+ + G A+ + + + I K G IC L D P+Q LI +F+ +++ RM+
Sbjct: 344 AIVRQLESGKANARTLQQIPVIVKANAGKAICGLIDMPVAPIQSLIHYFKGDIDARMR 401
>UniRef50_A5N6F8 Cluster: NADH dehydrogenase-related protein; n=1;
Clostridium kluyveri DSM 555|Rep: NADH
dehydrogenase-related protein - Clostridium kluyveri DSM
555
Length = 320
Score = 67.3 bits (157), Expect = 4e-10
Identities = 35/108 (32%), Positives = 57/108 (52%)
Frame = -3
Query: 498 IIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLW 319
II+ D++ +V + + F E CG+C PCREGV M ++ +GNA ++I+ +
Sbjct: 154 IIIGDRNC-MVDVVKDYLNFLSKEFCGKCIPCREGVKRMLEMATDICEGNAKERDIENML 212
Query: 318 EISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQEYSAAHGPSK 175
++S I ++C LG A P+ IR+FR E E ++ G K
Sbjct: 213 QMSYVISQASLCNLGKRAQNPIMIAIRYFRDEFEEHLKNKRCRQGVCK 260
>UniRef50_UPI0000384AE3 Cluster: COG1894: NADH:ubiquinone
oxidoreductase, NADH-binding (51 kD) subunit; n=1;
Magnetospirillum magnetotacticum MS-1|Rep: COG1894:
NADH:ubiquinone oxidoreductase, NADH-binding (51 kD)
subunit - Magnetospirillum magnetotacticum MS-1
Length = 514
Score = 66.5 bits (155), Expect = 7e-10
Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
Frame = -3
Query: 513 LGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPK- 337
+G+AA++V + D+ L F+ HESCGQCTPCR G + + D ASP+
Sbjct: 422 IGSAAVVVFSQEDDLRAHALNLARFFAHESCGQCTPCRVGTA-------KAADLLASPRW 474
Query: 336 EIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEL 220
+ D+L ++++ + +IC LG A Q L+RHF PE+
Sbjct: 475 DEDLLNDLAQVMRDASICGLGQAAPNVWQSLLRHF-PEV 512
>UniRef50_Q9ZBV8 Cluster: Putative respiratory chain oxidoreductase;
n=2; Streptomyces|Rep: Putative respiratory chain
oxidoreductase - Streptomyces coelicolor
Length = 646
Score = 66.5 bits (155), Expect = 7e-10
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Frame = -3
Query: 543 FDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYR 364
F+ A T+LG+ ++ D + + + + R+ F++ ESCGQC PCR G + ++R
Sbjct: 537 FEGTREAGTTLGSGVVMAFDDTVPLPRLLLRIAEFFRDESCGQCVPCRVGTVRQEEALHR 596
Query: 363 FVD--GNASPKEIDMLWEISKQIEGHTICALGDGAAW 259
D G A+ +I +L E+ + + +IC LG AW
Sbjct: 597 IADRTGAAAADDIALLREVGRAMRDASICGLGQ-TAW 632
>UniRef50_Q603S6 Cluster: NAD-reducing hydrogenase, alpha subunit;
n=9; Proteobacteria|Rep: NAD-reducing hydrogenase, alpha
subunit - Methylococcus capsulatus
Length = 610
Score = 62.5 bits (145), Expect = 1e-08
Identities = 26/94 (27%), Positives = 50/94 (53%)
Frame = -3
Query: 501 AIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDML 322
+ IV D++ D++ F+ HESCG CTPCR G + + ++ + +G+ + ++ L
Sbjct: 479 SFIVFDRTRDVIGIARNFTHFFAHESCGFCTPCRVGTALLKNLLDKIAEGHGATGDLAEL 538
Query: 321 WEISKQIEGHTICALGDGAAWPVQGLIRHFRPEL 220
+ + + + C LG AA P+ + + PE+
Sbjct: 539 SRLGRFVRSASHCGLGQTAANPILSTLERY-PEI 571
>UniRef50_A1WBG0 Cluster: NADH dehydrogenase (Quinone) precursor;
n=6; Proteobacteria|Rep: NADH dehydrogenase (Quinone)
precursor - Acidovorax sp. (strain JS42)
Length = 640
Score = 62.5 bits (145), Expect = 1e-08
Identities = 36/116 (31%), Positives = 61/116 (52%)
Frame = -3
Query: 567 RXRDSVDDFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVS 388
R D DFD L +G+AA+IV+ + A ++ F+ HESCGQCTPCR G +
Sbjct: 500 RLSDVPLDFDTLQPHGCFIGSAAVIVLSQHDRARDAALNMMRFFAHESCGQCTPCRVGTA 559
Query: 387 WMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEL 220
+++ A + D L ++++ + +IC LG A P++ + ++F E+
Sbjct: 560 KAAQLM------QAPLWDEDTLDDLAQVMADASICGLGQAAPNPIRCIHKYFAHEV 609
>UniRef50_O94500 Cluster: Iron sulfur cluster assembly protein; n=1;
Schizosaccharomyces pombe|Rep: Iron sulfur cluster
assembly protein - Schizosaccharomyces pombe (Fission
yeast)
Length = 452
Score = 60.9 bits (141), Expect = 3e-08
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Frame = -3
Query: 546 DFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIY 367
DFD L A +SLGT ++IV++ I +++ FY +C C CR+GV + + +
Sbjct: 336 DFDSLKALDSSLGTGSVIVLNDHDQIFESLLNFAKFYSTNTCHTCPVCRDGVEDVIETLK 395
Query: 366 RFVDGNASPKEI-DMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERR 211
DG+A ++ DM + + C GD + + R+F ++ R
Sbjct: 396 GLKDGHAHLSQLKDMFSKFNMPSSSKVFCGFGDSMRHQIHSIQRNFPDQITFR 448
Score = 32.7 bits (71), Expect = 9.9
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = -1
Query: 674 PAQXXXXGXXGGVXRGXENLXAIIPGGSLTPXIPKNVCETVLM 546
P + GGV G L I PGG + + KN CE V M
Sbjct: 293 PLKDLIENYAGGVRGGWNKLVGIFPGGPCSGILNKNQCEQVTM 335
>UniRef50_Q5P4U3 Cluster: Formate dehydrogenase, NAD(P) reducing,
beta subunit; n=41; Proteobacteria|Rep: Formate
dehydrogenase, NAD(P) reducing, beta subunit - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 585
Score = 60.5 bits (140), Expect = 4e-08
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Frame = -3
Query: 567 RXRDSVDDFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIM-FYKHESCGQCTPCREGV 391
R D DFD L +G+AAI+V + D + +A M F+ HESCGQCTPCR G
Sbjct: 465 RLADMPLDFDTLGEYGCFIGSAAIVVFSQH-DRARVLAENAMEFFAHESCGQCTPCRVGT 523
Query: 390 SWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEL 220
+ +++ + +L E+ + +IC LG A P+Q ++R F E+
Sbjct: 524 AKAAELM------KQPAWDAALLTELGTVMMDASICGLGQAAPNPMQSVLRFFPHEV 574
>UniRef50_Q18DS5 Cluster: NAD-reducing hydrogenase, alpha subunit;
n=1; Haloquadratum walsbyi DSM 16790|Rep: NAD-reducing
hydrogenase, alpha subunit - Haloquadratum walsbyi
(strain DSM 16790)
Length = 502
Score = 60.5 bits (140), Expect = 4e-08
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Frame = -3
Query: 516 SLGTAAII-VMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASP 340
+LGT I+ V+ + +V+ + F E+CG+C PCREG + + +++ DG P
Sbjct: 386 NLGTEGIVHVLSEDRCVVEFVGERAQFAAEENCGRCVPCREGTTQLAELLRSLYDGTYQP 445
Query: 339 KEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELE 217
+ ID E+ + + +IC G A P Q + F E E
Sbjct: 446 EAID---ELIRVMTTTSICEFGVNAGRPTQTALNAFESEFE 483
>UniRef50_A6LZW7 Cluster: 4Fe-4S ferredoxin, iron-sulfur binding
domain protein; n=1; Clostridium beijerinckii NCIMB
8052|Rep: 4Fe-4S ferredoxin, iron-sulfur binding domain
protein - Clostridium beijerinckii NCIMB 8052
Length = 414
Score = 60.1 bits (139), Expect = 6e-08
Identities = 31/112 (27%), Positives = 57/112 (50%)
Frame = -3
Query: 543 FDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYR 364
+ L+ T L + I V + +V + + ++ E+CG+C CREG+ + KII
Sbjct: 197 YSNLIGNGTMLEVSKIEVYNVDMCVVNWVTQKMLDNSKETCGKCVYCREGIYQLYKIIKD 256
Query: 363 FVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRM 208
+G +I++ ++S+ I+ T+C G A+ P+ I FR E E+ +
Sbjct: 257 ATEGKGKESDINLALQLSETIKIGTLCDFGRTASNPLYTAINKFRDEFEKHI 308
>UniRef50_P77907 Cluster: Formate dehydrogenase beta subunit; n=2;
Moorella thermoacetica|Rep: Formate dehydrogenase beta
subunit - Moorella thermoacetica (Clostridium
thermoaceticum)
Length = 707
Score = 59.7 bits (138), Expect = 8e-08
Identities = 26/110 (23%), Positives = 52/110 (47%)
Frame = -3
Query: 513 LGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKE 334
+G ++V D + D++ A+ + ESCG+C PCR G + ++ R G P +
Sbjct: 40 IGWDGLVVTDPAVDLLAALQAYYQAVQGESCGRCVPCRVGTRVIYNVLVRIAGGEGLPSD 99
Query: 333 IDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQEYSAAHG 184
+D+L ++ + ++C LG A V + ++ L +++ G
Sbjct: 100 LDLLRRVAWIVRDGSLCELGQAGAKAVLDFLDYYSEALRPFLEDSGRVAG 149
>UniRef50_Q7WMR8 Cluster: NAD-dependent formate dehydrogenase beta
subunit; n=107; Bacteria|Rep: NAD-dependent formate
dehydrogenase beta subunit - Bordetella bronchiseptica
(Alcaligenes bronchisepticus)
Length = 526
Score = 58.4 bits (135), Expect = 2e-07
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Frame = -3
Query: 546 DFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIY 367
D++ V +G ++ D + D+ + + F ESCG+CTPCR G + + I
Sbjct: 406 DYEAYVQISAMVGHGGLVAFDDTVDMARMARYAMEFCAIESCGKCTPCRIGSTRGVETID 465
Query: 366 RFVDGNASPKE-IDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPE 223
+ V G ++ + +L ++ + ++CALG A +PV + HF PE
Sbjct: 466 KIVAGGPQREQRVHLLRDLCDTMLAGSLCALGGMAPYPVLSALNHF-PE 513
>UniRef50_Q6NDH3 Cluster: Possible oxidoreductase; n=5;
Proteobacteria|Rep: Possible oxidoreductase -
Rhodopseudomonas palustris
Length = 673
Score = 58.0 bits (134), Expect = 2e-07
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 3/125 (2%)
Frame = -3
Query: 549 DDFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKII 370
D+FD A + + V D + +V A+ + +SCG CTPCR G + +
Sbjct: 42 DEFDEGNAIRAFIADRGFFVFDPTVSLVDALFHYLKAAAEQSCGACTPCRIGTVLVRDAL 101
Query: 369 YRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQEY--- 199
+ G + +D + + +QI ++C LG A + ++R FR +E+ + ++
Sbjct: 102 DQMRRGLDAALTLDDIVMLGEQIRQTSLCGLGQTCAVALLAVLRDFRERIEQELAQHRPI 161
Query: 198 SAAHG 184
A HG
Sbjct: 162 PAQHG 166
>UniRef50_Q3A639 Cluster: NADH:ubiquinone oxidoreductase,
NADH-binding (51 kD) subunit; n=1; Pelobacter
carbinolicus DSM 2380|Rep: NADH:ubiquinone
oxidoreductase, NADH-binding (51 kD) subunit -
Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)
Length = 571
Score = 58.0 bits (134), Expect = 2e-07
Identities = 33/114 (28%), Positives = 53/114 (46%)
Frame = -3
Query: 546 DFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIY 367
D++ L +G+ +I M V I F + E+CG+C P REG M +I+
Sbjct: 451 DYETLQEYGAIMGSGGLIAMSDDKSGVDIAKFFIDFCQDEACGKCLPGREGTKQMLQILE 510
Query: 366 RFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQ 205
+ G SP +I+ L + I +CAL A PV +R+F E + ++
Sbjct: 511 KIDSGEGSPDDIETLKVLCGVIRKTALCALCKTAVNPVLSTLRYFPEEYQEAVK 564
>UniRef50_A1SU84 Cluster: Hydrogenase, NADP-reducing subunit C; n=1;
Psychromonas ingrahamii 37|Rep: Hydrogenase,
NADP-reducing subunit C - Psychromonas ingrahamii
(strain 37)
Length = 588
Score = 57.2 bits (132), Expect = 4e-07
Identities = 27/100 (27%), Positives = 50/100 (50%)
Frame = -3
Query: 501 AIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDML 322
+ +V ++S DI++ F+ ESCG CTPCR G + + + G + ++D +
Sbjct: 463 SFMVFNQSRDILENALNFTHFFMQESCGFCTPCRVGTKLIYDLADKVATGQGARLDLDSI 522
Query: 321 WEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQE 202
+++ + G + C LG AA P+ + F +RM +
Sbjct: 523 KQLNHVMNGMSHCGLGQRAAEPLLETLEKFPEYFVKRMTD 562
>UniRef50_Q1V283 Cluster: NAD-dependent formate dehydrogenase beta
subunit; n=2; Candidatus Pelagibacter ubique|Rep:
NAD-dependent formate dehydrogenase beta subunit -
Candidatus Pelagibacter ubique HTCC1002
Length = 552
Score = 53.2 bits (122), Expect = 7e-06
Identities = 31/113 (27%), Positives = 55/113 (48%)
Frame = -3
Query: 546 DFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIY 367
DF AA LG A+I+ + K +++ I L F ESCG+C P R G S+ K ++
Sbjct: 437 DFQEFTAAGFMLGHASIVSIPKDFPMIEYIHHLFEFSAEESCGKCFPGRLG-SYRGKEMF 495
Query: 366 RFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRM 208
+ + +L E+ ++ +CAL P+ ++++F E++ M
Sbjct: 496 DQAKNKTAKIPLKLLNELLVTMQKGCLCALCGAIPTPIMNILKYFGDEMKDDM 548
>UniRef50_A1HDX5 Cluster: NADH dehydrogenase; n=4; Ralstonia
pickettii|Rep: NADH dehydrogenase - Ralstonia pickettii
12J
Length = 525
Score = 53.2 bits (122), Expect = 7e-06
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 2/111 (1%)
Frame = -3
Query: 543 FDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYR 364
++ + ++G +I T I + +A+++ F ESCG+CTPC G I+
Sbjct: 415 YEEMQTIDCAVGHGGVIAFADDTSIPRIVAQVLRFGARESCGKCTPCHLG----TPILAA 470
Query: 363 FVD--GNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELE 217
D N P + D + + ++C G G A VQ + RH+ EL+
Sbjct: 471 MADAAANRLPVDADRFRRLIDALAATSLCGHGRGLAEFVQSVRRHYPSELQ 521
>UniRef50_A6Q1P8 Cluster: FAD-dependent pyridine
nucleotide-disulphide oxidoreductase; n=1; Nitratiruptor
sp. SB155-2|Rep: FAD-dependent pyridine
nucleotide-disulphide oxidoreductase - Nitratiruptor sp.
(strain SB155-2)
Length = 680
Score = 52.0 bits (119), Expect = 2e-05
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Frame = -3
Query: 531 VAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYK--HESCGQCTPCREGVSWMNKIIYRFV 358
+ ++ +G A I +M D+VK Y+ E+CG+C P R G + + +
Sbjct: 39 IDSKAFIGWAGIALMSDDVDVVKLATEYAKQYQVYSEACGRCAPGRWGGRILYDLFDKIA 98
Query: 357 DGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQEYSAA 190
G +++ L E+SK + + C +G P+ ++ HF E++ +Q A+
Sbjct: 99 RGEGEKSDVEHLKEVSKTMMETSKCEIGRTVPKPLLDILEHFSDEIDDLIQNKRAS 154
>UniRef50_Q1K3H5 Cluster: FAD-dependent pyridine
nucleotide-disulphide oxidoreductase; n=1;
Desulfuromonas acetoxidans DSM 684|Rep: FAD-dependent
pyridine nucleotide-disulphide oxidoreductase -
Desulfuromonas acetoxidans DSM 684
Length = 651
Score = 50.0 bits (114), Expect = 6e-05
Identities = 24/98 (24%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Frame = -3
Query: 513 LGTAAIIVMDKSTDIVKAIARLIMFYKHESC-GQCTPCREGVSWMNKIIYRFVDGNASPK 337
+G ++++D TD+V A + + + C G+CTP ++G M + R + G+ +
Sbjct: 44 MGWDGVVLLDGETDVVAMAAEYMKRVQEKHCCGKCTPGKKGTRVMQDTLARILQGHGEER 103
Query: 336 EIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPE 223
+++++ + +EG C L +A PV +++FR +
Sbjct: 104 DLEIIENLKSLLEG-CKCTLCMTSAIPVLDTVKYFRDD 140
>UniRef50_Q73MB5 Cluster: Pyridine nucleotide-disulphide
oxidoreductase family protein; n=3; Bacteria|Rep:
Pyridine nucleotide-disulphide oxidoreductase family
protein - Treponema denticola
Length = 609
Score = 49.2 bits (112), Expect = 1e-04
Identities = 24/75 (32%), Positives = 42/75 (56%)
Frame = -3
Query: 429 ESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQ 250
++CG+C PCR G+ + I+ ++G ++ K +D++ E +K I CALG AA V
Sbjct: 50 QTCGKCAPCRIGLLQLKHILTDVLNGKSTMKTLDLIEETAKSIRETADCALGYEAADMVY 109
Query: 249 GLIRHFRPELERRMQ 205
I + R + E ++
Sbjct: 110 KSIIYCRDDFEEHIK 124
>UniRef50_Q2AFM4 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=2; Bacteria|Rep:
Respiratory-chain NADH dehydrogenase domain, 51 kDa
subunit - Halothermothrix orenii H 168
Length = 408
Score = 49.2 bits (112), Expect = 1e-04
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Frame = -3
Query: 519 TSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKII-YRFVDGNAS 343
+SLG+ A++V+ + + + + F+ E+CG C PCREG ++ ++ + DG
Sbjct: 303 SSLGSGAVVVVSEDHYLPDLMLNVSRFFMDETCGTCFPCREGNRRVHLLLKNKISDGRFD 362
Query: 342 PKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEL 220
E ++ +I + I C LG + V ++ F EL
Sbjct: 363 RDEKKLISDIGRAIHLAARCGLGQTSLNFVTSVLNKFEDEL 403
>UniRef50_A1SNE6 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=1; Nocardioides sp. JS614|Rep:
Respiratory-chain NADH dehydrogenase domain, 51 kDa
subunit - Nocardioides sp. (strain BAA-499 / JS614)
Length = 412
Score = 48.4 bits (110), Expect = 2e-04
Identities = 30/109 (27%), Positives = 54/109 (49%)
Frame = -3
Query: 540 DXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRF 361
D + AA+T LG A ++V + + AR++ + +S +C PC G+ + + +
Sbjct: 290 DAMRAAETPLG-AGVVVAPRGCPVAFT-ARVVDYLAAQSARRCGPCLNGLPALARAVQEV 347
Query: 360 VDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELER 214
VDG P+ ++ L + + G CA DG A V+ ++ F E+ R
Sbjct: 348 VDGAGHPERVEGL---AALVTGRGACAHPDGTARLVRSMLATFPDEVTR 393
>UniRef50_A6QCF8 Cluster: FAD-dependent pyridine
nucleotide-disulphide oxidoreductase; n=3;
Epsilonproteobacteria|Rep: FAD-dependent pyridine
nucleotide-disulphide oxidoreductase - Sulfurovum sp.
(strain NBC37-1)
Length = 669
Score = 46.4 bits (105), Expect = 8e-04
Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Frame = -3
Query: 513 LGTAAIIVMDKSTDIVKAIARLIMFYKH--ESCGQCTPCREGVSWMNKIIYRFVDGNASP 340
+G + + D++ D V+ ++ Y+ E+CG+C P R G + ++ + G S
Sbjct: 45 IGWDGVAIFDENIDAVELASKYAAQYQEYSEACGRCAPGRWGGRILYDLLDKIARGEGSH 104
Query: 339 KEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELE 217
+I L EISK + + C +G P+ L+ +++ + +
Sbjct: 105 DDIAHLKEISKTMMATSKCEIGKTVPKPILDLMEYYKDQFD 145
>UniRef50_A5X3H0 Cluster: HtxX; n=1; Xanthobacter flavus|Rep: HtxX -
Xanthobacter flavus
Length = 496
Score = 45.6 bits (103), Expect = 0.001
Identities = 27/90 (30%), Positives = 43/90 (47%)
Frame = -3
Query: 534 LVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVD 355
L+A LGT IV + AR+ + ESCGQC PCR G + +I+
Sbjct: 396 LLAEGLRLGTGGAIVFGADDEPRAIAARMAAYLARESCGQCGPCRIGTAHAARIL----- 450
Query: 354 GNASPKEIDMLWEISKQIEGHTICALGDGA 265
P ++ +L +++ + ++CALG A
Sbjct: 451 AAPGPLDLPLLDDLATVMGEGSLCALGRNA 480
>UniRef50_Q65UM2 Cluster: GltD protein; n=2; Pasteurellaceae|Rep:
GltD protein - Mannheimia succiniciproducens (strain
MBEL55E)
Length = 612
Score = 44.8 bits (101), Expect = 0.002
Identities = 19/78 (24%), Positives = 39/78 (50%)
Frame = -3
Query: 429 ESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQ 250
++CG+C PCR+G+ ++ ++ + G + + E+++ I + CA+G A +
Sbjct: 50 QTCGKCVPCRDGIPHLSFLLRDILAGEGDDSTMRQIRELAEMIRDGSDCAIGYQPAIEIL 109
Query: 249 GLIRHFRPELERRMQEYS 196
I F+ E E + S
Sbjct: 110 DSIEEFKEEYESHIHNKS 127
>UniRef50_Q5V638 Cluster: Putative NADH dehydrogenase I, F subunit;
n=1; Haloarcula marismortui|Rep: Putative NADH
dehydrogenase I, F subunit - Haloarcula marismortui
(Halobacterium marismortui)
Length = 507
Score = 44.8 bits (101), Expect = 0.002
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Frame = -3
Query: 513 LGTAAII-VMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPK 337
LGT ++ + D V+ + + F E+ G+C P REG + +++ DG+
Sbjct: 395 LGTNGVVELFDTGRCTVETVGKRARFASMENSGRCVPGREGTKQLAELLRDIYDGSF--- 451
Query: 336 EIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPE 223
E D + E+S+ + + C G A PV I F PE
Sbjct: 452 ENDKIRELSRVMRQSSNCQTGAHAPRPVTTAIDEFEPE 489
>UniRef50_Q1PZQ6 Cluster: Similar to NADH dehydrogenase I chain F
(1st module) EC: 1.6.5.3; n=1; Candidatus Kuenenia
stuttgartiensis|Rep: Similar to NADH dehydrogenase I
chain F (1st module) EC: 1.6.5.3 - Candidatus Kuenenia
stuttgartiensis
Length = 675
Score = 44.4 bits (100), Expect = 0.003
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 3/117 (2%)
Frame = -3
Query: 558 DSVDDFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMN 379
D+ +FD + LG+A IV+D + I + + F ESC QC C+ G+ +
Sbjct: 514 DTPTEFDAFQMIGSGLGSAGFIVLDNAASIPRVTQAVARFLYVESCNQCPACKAGLRTAS 573
Query: 378 KIIYRFVDG---NASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELE 217
I + + +D + E + C L A + GL++ FR E E
Sbjct: 574 HGIDELLQHLHLHDDRAGLDWIMEGAHSAPQANRCFLPAQGAKLIPGLVQSFREEFE 630
>UniRef50_Q74FU5 Cluster: Fe(III) reductase, beta subunit; n=6;
Geobacter|Rep: Fe(III) reductase, beta subunit -
Geobacter sulfurreducens
Length = 672
Score = 44.0 bits (99), Expect = 0.004
Identities = 22/98 (22%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Frame = -3
Query: 513 LGTAAIIVMDKSTDIVKAIARLIMFYKHE-SCGQCTPCREGVSWMNKIIYRFVDGNASPK 337
+G II+ D D+ A + + + CG+CTP ++G + ++ ++G A+
Sbjct: 43 MGWDGIILYDLKVDVPAMAAEYMKRVQTQYCCGKCTPGKKGTKVLADVLAAIIEGRATEA 102
Query: 336 EIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPE 223
++D + +++ + + C L + PV ++HFR +
Sbjct: 103 DLDTIDDLADLLT-NCKCTLCQSSTIPVLDAVKHFRED 139
>UniRef50_A0K164 Cluster: NADH dehydrogenase; n=2;
Actinomycetales|Rep: NADH dehydrogenase - Arthrobacter
sp. (strain FB24)
Length = 566
Score = 44.0 bits (99), Expect = 0.004
Identities = 26/93 (27%), Positives = 43/93 (46%)
Frame = -3
Query: 516 SLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPK 337
+LG A I+ D + + L F ESCGQC+PCR G +W + + D +P
Sbjct: 469 ALGHAGIVAFDDRLSGEQVLRNLWDFAAAESCGQCSPCRVG-TWRGRALAELPD---APD 524
Query: 336 EIDMLWEISKQIEGHTICALGDGAAWPVQGLIR 238
++ + + ++CA G V+ L+R
Sbjct: 525 VGSERGDVLRTMAAGSLCAFGRRVPAAVRSLVR 557
>UniRef50_Q9ACZ1 Cluster: Putative oxidoreductase; n=3;
Streptomyces|Rep: Putative oxidoreductase - Streptomyces
coelicolor
Length = 525
Score = 43.6 bits (98), Expect = 0.005
Identities = 25/105 (23%), Positives = 53/105 (50%)
Frame = -3
Query: 534 LVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVD 355
L A +LG AI+ + + T + ++ + ES GQC PC G+ + + ++
Sbjct: 291 LDAVGGALGAGAILPISQETCPLGEALQVAKWLAEESAGQCGPCYLGLPAAARGLEDILN 350
Query: 354 GNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEL 220
G P ++ L ++++ ++ C+ DG+A ++ +I+ F +L
Sbjct: 351 G-GGPAALETLKQVARNVKRRGACSHPDGSAMFLESMIKVFTDDL 394
>UniRef50_Q4AEJ7 Cluster: Hydrogen dehydrogenase; n=1; Chlorobium
phaeobacteroides BS1|Rep: Hydrogen dehydrogenase -
Chlorobium phaeobacteroides BS1
Length = 497
Score = 43.2 bits (97), Expect = 0.007
Identities = 24/93 (25%), Positives = 45/93 (48%)
Frame = -3
Query: 510 GTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEI 331
G + I+ + + + + F+ ESCG C+ CR + + + + ++G ++I
Sbjct: 406 GGSMIVFNNTRNLLTDVVLNFMNFFIEESCGSCSTCRNMPFVLREKLLKIIEGRGVKQDI 465
Query: 330 DMLWEISKQIEGHTICALGDGAAWPVQGLIRHF 232
+ E +K + + C LG AA PV IR+F
Sbjct: 466 KDMIEWAK-VLNVSRCGLGQTAANPVVSSIRNF 497
>UniRef50_O96948 Cluster: Hydrogenase; n=14; Eukaryota|Rep:
Hydrogenase - Nyctotherus ovalis
Length = 1206
Score = 41.1 bits (92), Expect = 0.028
Identities = 21/76 (27%), Positives = 34/76 (44%)
Frame = -3
Query: 501 AIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDML 322
++++ + S D+ K + F ESC QC PCR+G ++ D S + L
Sbjct: 1102 SVVLFNSSCDLGKIYENKLKFMAEESCKQCVPCRDGSYIFHRAFKELRDTGKSSYNMRAL 1161
Query: 321 WEISKQIEGHTICALG 274
S+ +ICA G
Sbjct: 1162 AVASESAARSSICAHG 1177
>UniRef50_UPI00006DD0D0 Cluster: hypothetical protein
Bmal2_03001021; n=1; Burkholderia mallei 2002721280|Rep:
hypothetical protein Bmal2_03001021 - Burkholderia
mallei 2002721280
Length = 340
Score = 36.7 bits (81), Expect = 0.61
Identities = 22/68 (32%), Positives = 31/68 (45%)
Frame = -1
Query: 335 KSTCCGKFRNKSKGTRSALWATEPRGRCRDSYVTSGPSSSDACRSTRPRTGRAKPSACTS 156
+ TCC + R S + RC S G S S +CRS R + ++ S+CTS
Sbjct: 271 RRTCCRRTRMSSPCCSRRSRSASASARCCASGCRGGASRSGSCRSARSASACSR-SSCTS 329
Query: 155 SAIRAERQ 132
A R R+
Sbjct: 330 RATRCPRR 337
>UniRef50_Q67JR5 Cluster: NADH dehydrogenase subunit; n=1;
Symbiobacterium thermophilum|Rep: NADH dehydrogenase
subunit - Symbiobacterium thermophilum
Length = 394
Score = 36.3 bits (80), Expect = 0.81
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -3
Query: 543 FDXLVAAQTSLGTAAIIVMDKSTDIVKAIARL-IMFYKHESCGQCTPCREG 394
++ L A +SLG +A++V ++ + + R + SCGQC CREG
Sbjct: 291 YEDLAALGSSLGNSAVVVFRRADATLPDLVRENVALLARGSCGQCRGCREG 341
>UniRef50_UPI0000E479C5 Cluster: PREDICTED: similar to mitochondrial
complex I subunit NDUFV1; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to mitochondrial
complex I subunit NDUFV1 - Strongylocentrotus purpuratus
Length = 319
Score = 35.5 bits (78), Expect = 1.4
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -1
Query: 644 GGVXRGXENLXAIIPGGSLTPXIPKNVCETVLMT 543
GGV G +NL A+IPGGS IPK + T+ ++
Sbjct: 91 GGVEGGWDNLLAVIPGGSSISMIPKELDLTISLS 124
>UniRef50_UPI0000DB7593 Cluster: PREDICTED: similar to NFAT
CG11172-PA; n=1; Apis mellifera|Rep: PREDICTED: similar
to NFAT CG11172-PA - Apis mellifera
Length = 1265
Score = 35.1 bits (77), Expect = 1.9
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = -1
Query: 326 CCGKFRNKSKGTRSALWATEPRGRCRDSYVTS---GPSSSDACRSTRPRTGRAKPSACTS 156
CC + + G AT R CR TS G + + A RSTR + P++C +
Sbjct: 1001 CCSDAASATSGAGCCACATTSRASCRSGSATSGTGGTTGAAASRSTRGAACASCPTSCAT 1060
Query: 155 SA 150
SA
Sbjct: 1061 SA 1062
>UniRef50_A1SFH1 Cluster: Pentapeptide repeat protein; n=1;
Nocardioides sp. JS614|Rep: Pentapeptide repeat protein
- Nocardioides sp. (strain BAA-499 / JS614)
Length = 885
Score = 33.9 bits (74), Expect = 4.3
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +3
Query: 177 CSARARPSTPACVARARAGSDV*VPAPATRLRRPERRSCALRFVSKFPTACRFLSVKHYH 356
C+ + RP+ P R + AP RL P + ALR + + P++ R S H+H
Sbjct: 603 CAIKGRPTWPEKAVLDRLADEAVAKAPEFRLAAPSELTDALRAL-QAPSSTRITSTTHFH 661
>UniRef50_Q62CS2 Cluster: Conserved domain protein; n=1;
Burkholderia mallei|Rep: Conserved domain protein -
Burkholderia mallei (Pseudomonas mallei)
Length = 132
Score = 33.5 bits (73), Expect = 5.7
Identities = 28/79 (35%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = +3
Query: 96 VQWFLRYSQSEELTFGAYCTTSTGARLC-SARAR-PSTPACVARARAGSDV*VPAP-ATR 266
V W R S+S+ + C + R A AR A +RA+ G VPAP A
Sbjct: 15 VSWRARSSRSDSCGDLSRCERAPDGRAAPGASARLGDAGAGGSRAKPGRRASVPAPNAAG 74
Query: 267 LRRPERRSCALRFVSKFPT 323
RRP R SC R + PT
Sbjct: 75 ARRPRRASCRCRDARRPPT 93
>UniRef50_A7ATC7 Cluster: Variant erythrocyte surface antigen-1,
alpha subunit; n=27; Babesia bovis|Rep: Variant
erythrocyte surface antigen-1, alpha subunit - Babesia
bovis
Length = 1378
Score = 33.5 bits (73), Expect = 5.7
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = -1
Query: 344 HRKKSTCCGKFRNKSKGTRSALWAT-EPRGRCRDSYVTSGPSSSDACR 204
H K CCG N + G R G+CR+ V G S D+CR
Sbjct: 157 HGKFKCCCGNNGNHNGGLRCCKGQNGADGGKCRNGKVCDGSSKGDSCR 204
>UniRef50_UPI0000E816CC Cluster: PREDICTED: hypothetical protein;
n=1; Gallus gallus|Rep: PREDICTED: hypothetical protein
- Gallus gallus
Length = 184
Score = 33.1 bits (72), Expect = 7.5
Identities = 21/59 (35%), Positives = 22/59 (37%)
Frame = -1
Query: 323 CGKFRNKSKGTRSALWATEPRGRCRDSYVTSGPSSSDACRSTRPRTGRAKPSACTSSAI 147
CG G R A T P G C VTS P RS R PSA S A+
Sbjct: 32 CGHMAASGPGGRGAARTTLPMGHCGRWAVTSPPIGQRRPRSARGLVAAFGPSASLSGAV 90
>UniRef50_Q0RX70 Cluster: Possible transposase, N-terminal; n=1;
Rhodococcus sp. RHA1|Rep: Possible transposase,
N-terminal - Rhodococcus sp. (strain RHA1)
Length = 335
Score = 33.1 bits (72), Expect = 7.5
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -1
Query: 311 RNKSKGTRSALWATEPRGRCRDSYVTSGPSSSDACRSTRPRTGRAKPSACTSSA 150
R +S G+R W T P C T PS +D STR R + P C +S+
Sbjct: 227 RARSTGSR---WRTTPCCGCCTIPATPAPSPTDGTASTRCRAAKPSPRNCPASS 277
>UniRef50_P28739 Cluster: Kinesin-like protein klpA; n=8;
Eurotiomycetidae|Rep: Kinesin-like protein klpA -
Emericella nidulans (Aspergillus nidulans)
Length = 763
Score = 33.1 bits (72), Expect = 7.5
Identities = 25/71 (35%), Positives = 30/71 (42%)
Frame = -1
Query: 338 KKSTCCGKFRNKSKGTRSALWATEPRGRCRDSYVTSGPSSSDACRSTRPRTGRAKPSACT 159
K T + N S TRSA A+ PRG S TSG + S RP G A P T
Sbjct: 67 KAHTRANSYANSSTLTRSASAASRPRGPLSSS--TSGRPKTSMSTSRRP-NGHALPRPAT 123
Query: 158 SSAIRAERQLF 126
S E + +
Sbjct: 124 SLDTHQEERSY 134
>UniRef50_Q6QI31 Cluster: LRRGT00177; n=2; Rattus norvegicus|Rep:
LRRGT00177 - Rattus norvegicus (Rat)
Length = 155
Score = 32.7 bits (71), Expect = 9.9
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = +1
Query: 202 LLHASLELGPEVTYESLHRPRGSVAQSADRVPFDLFRNFPQHVD 333
L++A LE GPEV SL GSV + P L + PQ VD
Sbjct: 20 LVNAGLEFGPEVQASSLKHSLGSVKRENSFPPAQLKQLSPQMVD 63
>UniRef50_O23072 Cluster: A_IG005I10.16 protein; n=8; Arabidopsis
thaliana|Rep: A_IG005I10.16 protein - Arabidopsis
thaliana (Mouse-ear cress)
Length = 785
Score = 32.7 bits (71), Expect = 9.9
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +2
Query: 281 AQIVCPSICFEISH--SMSISFGEALPSTNLYIILFIQETPSRQGVHW 418
A +V S+C++ SH +MSIS+G + T Y+ + E P+R W
Sbjct: 337 ASLVQQSVCYDKSHQWTMSISWGYTVQITRTYMPARMMEVPTRTFNDW 384
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 600,520,992
Number of Sequences: 1657284
Number of extensions: 12016546
Number of successful extensions: 39274
Number of sequences better than 10.0: 89
Number of HSP's better than 10.0 without gapping: 36968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39183
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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