Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_N07
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch...    61   2e-10
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    27   3.8  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    26   6.6  
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo...    26   6.6  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    26   6.6  
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    25   8.7  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   8.7  

>SPBC18E5.10 |||iron sulfur cluster assembly protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
 Frame = -3

Query: 546 DFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIY 367
           DFD L A  +SLGT ++IV++    I +++     FY   +C  C  CR+GV  + + + 
Sbjct: 336 DFDSLKALDSSLGTGSVIVLNDHDQIFESLLNFAKFYSTNTCHTCPVCRDGVEDVIETLK 395

Query: 366 RFVDGNASPKEI-DMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERR 211
              DG+A   ++ DM  + +        C  GD     +  + R+F  ++  R
Sbjct: 396 GLKDGHAHLSQLKDMFSKFNMPSSSKVFCGFGDSMRHQIHSIQRNFPDQITFR 448



 Score = 32.7 bits (71), Expect = 0.057
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = -1

Query: 674 PAQXXXXGXXGGVXRGXENLXAIIPGGSLTPXIPKNVCETVLM 546
           P +       GGV  G   L  I PGG  +  + KN CE V M
Sbjct: 293 PLKDLIENYAGGVRGGWNKLVGIFPGGPCSGILNKNQCEQVTM 335


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 384 MNKIIYRFVDGNASPKEIDMLWEISKQIEG 295
           +NK + ++VD   +P E   L+EIS Q+EG
Sbjct: 217 INKPVTKYVDN--TPVEFGWLYEISYQLEG 244


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = -3

Query: 474 DIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIE 298
           D+V+A+ R+ + Y +   GQ      GV W+ +        +  P+ +  ++E++K  E
Sbjct: 709 DVVEAMFRIALIYLNGLLGQKRNISLGVQWLERAC-----KSKGPESVRAMYELAKIYE 762


>SPAC9E9.10c |cbh1|cbh|centromere binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 514

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +1

Query: 262 RGSVAQSADRVPFDLFRNFPQHVDFF 339
           + +V Q+ + + F++FR +P H+  F
Sbjct: 142 QSAVNQALESIKFEVFREYPVHIQEF 167


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = -3

Query: 279  LGDGAAWPVQGLIRHFRPELERRMQEYSAAHGPSKAERLY**CNTRRTSTLH 124
            LGD   +  Q L      ++E  + E  ++ GP+  +R+Y     +++ST H
Sbjct: 867  LGDEYLYSEQSLNHEEEEQMEEELSEIFSSGGPNVVDRVY----LKKSSTRH 914


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 17/60 (28%), Positives = 21/60 (35%)
 Frame = -1

Query: 266 PRGRCRDSYVTSGPSSSDACRSTRPRTGRAKPSACTSSAIRAERQLFTLRVSKEPLYRER 87
           P G     Y    P SSD  RS     G     A   S +R  R  +     + PL+  R
Sbjct: 51  PPGTTTVVYQKDVPRSSDGSRSMTAGLGGFMVGALAGSVLRGHRAYYAPPPPRGPLFGPR 110


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -3

Query: 393 VSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLI 241
           VSW NK+ +    GNA+  E   +W++  + +   +  LG        G +
Sbjct: 168 VSWNNKVSHILASGNAT--EYTTVWDVKLKRQVLNLSYLGAAGVSAATGAV 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,374,868
Number of Sequences: 5004
Number of extensions: 45355
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)