Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_N07
         (749 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08530.1 68418.m01013 NADH-ubiquinone oxidoreductase 51 kDa s...   188   3e-48
At4g00300.1 68417.m00037 fringe-related protein + weak similarit...    33   0.27 
At2g33880.1 68415.m04159 expressed protein                             30   1.9  
At1g73680.1 68414.m08532 pathogen-responsive alpha-dioxygenase, ...    29   2.5  
At4g02720.1 68417.m00368 expressed protein temporary automated f...    29   3.3  
At4g20160.1 68417.m02949 expressed protein ; expression supporte...    29   4.4  
At5g57970.1 68418.m07253 methyladenine glycosylase family protei...    28   7.6  
At5g11430.1 68418.m01335 transcription elongation factor-related...    28   7.6  
At1g44880.1 68414.m05142 Ulp1 protease family protein similar to...    28   7.6  

>At5g08530.1 68418.m01013 NADH-ubiquinone oxidoreductase 51 kDa
           subunit, mitochondrial, putative similar to
           NADH-ubiquinone oxidoreductase 51 kDa subunit,
           mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) from
           {Homo sapiens} SP|P49821, {Bos taurus} SP|P25708,
           {Aspergillus niger} SP|Q92406; contains Pfam profile
           PF01512: Respiratory-chain NADH dehydrogenase 51 Kd
           subunit
          Length = 486

 Score =  188 bits (459), Expect = 3e-48
 Identities = 87/119 (73%), Positives = 98/119 (82%)
 Frame = -3

Query: 558 DSVDDFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMN 379
           D + DFD L A Q+ LGTAA+IVMDKSTD+V AIARL  FYKHESCGQCTPCREG  W+ 
Sbjct: 357 DVLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLW 416

Query: 378 KIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQE 202
            I+ R   GNA  +EIDML E++KQIEGHTICALGD AAWPVQGLIRHFRPELERR++E
Sbjct: 417 MIMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIRE 475



 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 23/33 (69%), Positives = 25/33 (75%)
 Frame = -1

Query: 644 GGVXRGXENLXAIIPGGSLTPXIPKNVCETVLM 546
           GGV  G +NL AIIPGGS  P IPKN+CE VLM
Sbjct: 328 GGVRGGWDNLLAIIPGGSSVPLIPKNICEDVLM 360


>At4g00300.1 68417.m00037 fringe-related protein + weak similarity
           to Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 785

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +2

Query: 281 AQIVCPSICFEISH--SMSISFGEALPSTNLYIILFIQETPSRQGVHW 418
           A +V  S+C++ SH  +MSIS+G  +  T  Y+   + E P+R    W
Sbjct: 337 ASLVQQSVCYDKSHQWTMSISWGYTVQITRTYMPARMMEVPTRTFNDW 384


>At2g33880.1 68415.m04159 expressed protein 
          Length = 378

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = -1

Query: 338 KKSTCCGKFRNKSKGTRSALWATEPRGRCRDSYVTSGPSSSDACRSTRPRTGRAK 174
           +KS    K R     ++ +L  T+P+ + + S  +S  SSS + +ST+PR  + K
Sbjct: 107 RKSRSKHKLRLLHNHSKHSLPQTQPQPQPQPSASSSSSSSSSSSKSTKPRKSKNK 161


>At1g73680.1 68414.m08532 pathogen-responsive alpha-dioxygenase,
           putative similar to pathogen-inducible alpha-dioxygenase
           [Nicotiana attenuata] GI:12539609; contains Pfam profile
           PF03098: Animal haem peroxidase
          Length = 631

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 453 RLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDM 325
           +L++   H+SCG  T      +WM  ++ + +DG   P  IDM
Sbjct: 430 QLLVSMGHQSCGALTLWNYP-NWMRNLVAQDIDGEDRPHLIDM 471


>At4g02720.1 68417.m00368 expressed protein temporary automated
           functional assignment
          Length = 422

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = -1

Query: 341 RKKSTCCGKFRNKSKGTRSALWATEPRGRCRDSYVTSGPSSSDACRSTRPRTGRAKPSAC 162
           RKKS     FR K    R   ++        DS      SSS     T+ ++ R K S+ 
Sbjct: 159 RKKSRSSRSFRKKRSHRRKTKYSDSDESSDEDSKAEISASSSGEEEDTKSKSKRRKKSSD 218

Query: 161 TSS 153
           +SS
Sbjct: 219 SSS 221


>At4g20160.1 68417.m02949 expressed protein ; expression supported
           by MPSS
          Length = 1188

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/69 (27%), Positives = 27/69 (39%)
 Frame = -1

Query: 344 HRKKSTCCGKFRNKSKGTRSALWATEPRGRCRDSYVTSGPSSSDACRSTRPRTGRAKPSA 165
           HR KST  G   N+S      +     + +     + +G S+S A  STR R     P  
Sbjct: 323 HRSKSTSAGSDSNRSSRGSGVMHLLREKYKANSENIETGASTSHA--STRGRIMDKDPHK 380

Query: 164 CTSSAIRAE 138
            T   +  E
Sbjct: 381 ATEKKVLQE 389


>At5g57970.1 68418.m07253 methyladenine glycosylase family protein
           similar to SP|P05100 DNA-3-methyladenine glycosylase I
           (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
           constitutive) {Escherichia coli}; contains Pfam profile
           PF03352: Methyladenine glycosylase
          Length = 347

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -1

Query: 368 TDSSMVMLHRKKSTCCGKF-RNKSKGTRSALWATEPRGRCRDSYVTSGPSSSD 213
           +D+SM   H + ST  G+  R+ S G+RS  + ++PR    +  + S P+ S+
Sbjct: 101 SDASMDSFHSRAST--GRLIRSYSVGSRSKSYPSKPRSVVSEGALDSPPNGSE 151


>At5g11430.1 68418.m01335 transcription elongation factor-related
           contains weak similarity to transcription elongation
           factors
          Length = 871

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +1

Query: 202 LLHASLE-LGPEVTYESLHRPRGSVAQSADRVPFDLFRNFPQHVDFFR*SITIDESVYNL 378
           +LH   + L  E  +  +H  + +  +SA + P     N  QHV   + S+   E V   
Sbjct: 49  ILHIPTKILSQETLHSLMHGKKATQTESAPQKPAKPVVNKKQHVPPPQRSVKAMEEVNES 108

Query: 379 VHPGDTFAARSALAAGLVLVEHDESSDR 462
           V        R +LA+ L LV+ D+ S +
Sbjct: 109 VRS----KMRESLASALALVKKDDDSPK 132


>At1g44880.1 68414.m05142 Ulp1 protease family protein similar to
            At5g28170, At1g35110, At3g42530, At4g19320, At5g36020,
            At4g03970, At3g43010, At2g10350; contains Pfam profile
            PF02902: Ulp1 protease family, C-terminal catalytic
            domain
          Length = 1038

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 531  VAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTP 406
            V    +LG  ++ ++D +TD+ +   RL   YK+   G C P
Sbjct: 944  VGLAINLGVWSVEILDPNTDLYEEDERLDGLYKNLRYGDCGP 985


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,812,243
Number of Sequences: 28952
Number of extensions: 257485
Number of successful extensions: 757
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)