Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_N05
         (918 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    31   0.30 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    29   1.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.1  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    26   6.5  
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    26   8.6  

>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 26/87 (29%), Positives = 37/87 (42%)
 Frame = -1

Query: 282 TPHKTPPPAAHKESRPKARPALHTHLADLQMRPAANSLMFTANKLSKPAGPQHHAPLPPV 103
           TPH   PP     +     PAL+T L  L +RP      +  + LS+   P H A  P  
Sbjct: 185 TPHAFVPPV----NNASPLPALNT-LPQL-LRPRNLDAQWRPSSLSQTNSPTHAAN-PSF 237

Query: 102 PQNALSPSFVSSAPRYQGARHHNQTGA 22
           P   ++ +  +  P   G RH   TG+
Sbjct: 238 PGTIVTHNTSNFRPEGGGHRHRRSTGS 264


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 21/69 (30%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
 Frame = -1

Query: 291 HLSTPHKTPPPAAHKESRPKARPALHTHLADLQMRPAANSLMFTANKLSKPAGPQHHAP- 115
           H    H  PPP  HK       P +H H     M P     M        P  P HH P 
Sbjct: 201 HEPGEHMPPPPMHHKPGEHMPPPPMH-HEPGEHMPPPP---MHHEPGEHMPPPPMHHEPG 256

Query: 114 --LPPVPQN 94
             +PP P +
Sbjct: 257 EHMPPPPMH 265


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -1

Query: 237  PKARPALHTHLADLQMRPAANSLMFTANKLSKPAGPQHHAPLPPV-PQNAL-SPSFVSSA 64
            P+  P L    + + + P     + T+ K   P     HAP PPV P NA+ S + V++ 
Sbjct: 1339 PQQAP-LENQFSKMSLEPPVRPAVPTSPKPQIPDSSNVHAPPPPVQPMNAMPSHNAVNAR 1397

Query: 63   P 61
            P
Sbjct: 1398 P 1398


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 17/45 (37%), Positives = 18/45 (40%)
 Frame = -1

Query: 156 NKLSKPAGPQHHAPLPPVPQNALSPSFVSSAPRYQGARHHNQTGA 22
           N  SKP  P  H    P+P   LS S  SS  R Q     N   A
Sbjct: 299 NSPSKPEIPFRHPTSKPLPPKPLSRSKSSSLSRNQTRSQLNDLSA 343


>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 108 PVPQNALSPSFVSSAPRYQGARHHNQTG 25
           P P +A +P   S++    GA+ HN TG
Sbjct: 69  PEPTSASTPPSASASSLPNGAQKHNHTG 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,919,010
Number of Sequences: 5004
Number of extensions: 25833
Number of successful extensions: 83
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)