Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_N05
(918 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.43
SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1) 32 0.56
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0) 31 1.3
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.7
SB_23318| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6) 30 3.0
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37) 29 4.0
SB_24292| Best HMM Match : LTXXQ (HMM E-Value=1.7) 29 4.0
SB_15408| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_17635| Best HMM Match : CUB (HMM E-Value=0) 29 5.3
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.0
SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43) 29 7.0
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_19076| Best HMM Match : HECT (HMM E-Value=0) 28 9.2
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 28 9.2
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 32.7 bits (71), Expect = 0.43
Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 5/108 (4%)
Frame = -1
Query: 408 LPRREHLFRRARPLDEVLAQLHLPGAAPDALAFRRSSHLHL---STPH-KTPPP-AAHKE 244
+P + + RA P E A++ PGA + +SH + PH + PPP A+H+
Sbjct: 361 VPPPDGPYTRALPPGEPYARMPPPGATHPRVPSPGASHPRVPPPGAPHPRVPPPGASHQR 420
Query: 243 SRPKARPALHTHLADLQMRPAANSLMFTANKLSKPAGPQHHAPLPPVP 100
RP P H + P A F P P AP P VP
Sbjct: 421 VRPPGAP--HPRVPP----PGAPHPRFPPPGAPHPRVPPPGAPHPRVP 462
>SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1)
Length = 530
Score = 32.3 bits (70), Expect = 0.56
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -1
Query: 141 PAGPQHHAPLPPVPQNALSPSF 76
PA PQH AP P VPQ+ SP F
Sbjct: 416 PAVPQHPAPPPAVPQHVGSPGF 437
>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
Length = 960
Score = 31.1 bits (67), Expect = 1.3
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Frame = +2
Query: 86 DSAFCGTGGSGAWCCGPAGLDSL--LAVNMSELAAGRIC--RSAKCVCSAGRAFGR-DSL 250
D C G +G C P GLDS N + + C S +C C+ G R +S
Sbjct: 389 DGCSCNAGWTGPECRDPCGLDSWGPGCTNTCQCSRNGECDAASGRCACAPGFTGDRCESR 448
Query: 251 CAAG-GGVLCGVDRCRCE 301
C G G C + C C+
Sbjct: 449 CPKGYYGTNCS-NACTCK 465
>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4865
Score = 30.7 bits (66), Expect = 1.7
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Frame = -1
Query: 339 PGAAPDALAFRRSSHLHLSTPHKTPPPAAHK----ESRPKARPALHTHLADLQMRPAANS 172
P P + +RS STP ++P PAA K E++ ++ P RPA NS
Sbjct: 3151 PSPGPIESSVKRSEK---STPKRSPSPAAGKQRGDEAKGRSTPVQTPRRGSQDNRPAENS 3207
Query: 171 LMFTANKLSKPAGPQ 127
+T N K G Q
Sbjct: 3208 -QYTENTPRKDEGQQ 3221
>SB_23318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 500
Score = 30.3 bits (65), Expect = 2.3
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +2
Query: 176 LAAGRICRSAKCVCSAGRA----FGRDSLCAAGGGVLCGVDRCRCEERRK 313
+ A +C + C GR G + +C G +CGV+R RCE+R K
Sbjct: 233 MGAEEMCGWERSRCLDGRGAYVWMGEEQMC--GCEQMCGVERGRCEQRSK 280
>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
Length = 496
Score = 29.9 bits (64), Expect = 3.0
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Frame = -1
Query: 279 PHKTPPPAAHKESRPKARPALHTH-LADLQMRPAANSLMFTANKL--SKPAGPQHHAPLP 109
P P P + S P+ P+LH + + L+ P+ ++ S P P H P
Sbjct: 290 PRYPPSPPRYPPSPPRYPPSLHRYPQSPLRYPPSPIRYPPLPSRYPPSPPRYPSSHPRYP 349
Query: 108 PVPQN--ALSPSFVSSAPRY 55
P P P + SS PRY
Sbjct: 350 PSPPRYPPSPPRYPSSHPRY 369
>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
Length = 1052
Score = 29.5 bits (63), Expect = 4.0
Identities = 34/108 (31%), Positives = 42/108 (38%)
Frame = -1
Query: 369 LDEVLAQLHLPGAAPDALAFRRSSHLHLSTPHKTPPPAAHKESRPKARPALHTHLADLQM 190
L VL LH P + H LS+ H T PA H PALHT L L
Sbjct: 575 LHTVLPSLHT--LLPALYTLLPALHTVLSSLH-TLLPALHT-----VLPALHTVLPALH- 625
Query: 189 RPAANSLMFTANKLSKPAGPQHHAPLPPVPQNALSPSFVSSAPRYQGA 46
S ++T P H LP + A SPS+ ++P Y A
Sbjct: 626 --TVLSALYTLLPALHTVLPALHTLLPALHTLAASPSYSPASPSYTPA 671
>SB_24292| Best HMM Match : LTXXQ (HMM E-Value=1.7)
Length = 288
Score = 29.5 bits (63), Expect = 4.0
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 342 LPGAAPDALAFRRSSHLHLSTPHKTPPPAAHKESRPKAR 226
+P P L+F S L S+P +TPP + S P+ R
Sbjct: 12 VPLEVPSPLSFSTLSPLATSSPRRTPPSFTPRSSIPRRR 50
>SB_15408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 779
Score = 29.5 bits (63), Expect = 4.0
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +2
Query: 179 AAGRICRSAKCVCSAGRAFGRDSLCAAGGGVLCGVDRCRCEERRKASASGAAPGRC 346
A R+CR KCV + G +F D C AG + ++C + K + A GRC
Sbjct: 95 AIPRVCRGGKCVNTVG-SFKCD--CGAGRTMDPVTNKCEDVDECKTITNICANGRC 147
>SB_17635| Best HMM Match : CUB (HMM E-Value=0)
Length = 630
Score = 29.1 bits (62), Expect = 5.3
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = -1
Query: 402 RREHLFRRARPLDEVLAQLHLPGAAPDALAFRRSSHLHLSTPHKTPPPAAHKESRPKARP 223
RR RR +D VL + A+P S +P PPP +H E+
Sbjct: 501 RRRRRRRRMENIDRVLLGNNGSPASPPPPYQVSGSACSTESPPLHPPPYSHHEASESPPE 560
Query: 222 ALHT--HLADLQMRPAANSLMFTANKL 148
AL T LA Q++ A + AN+L
Sbjct: 561 ALTTLQELAAGQLQNAIEPMGADANRL 587
>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6863
Score = 28.7 bits (61), Expect = 7.0
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -1
Query: 381 RARPLDEVLAQLHLPGAAPDALAFRRS-SHLHLSTPHKTPPPAAHKES 241
+A+ +E L+Q H + D + R+ S+ L+ K+PPPA + +S
Sbjct: 221 KAKSSEETLSQAHFFSTSEDIRSTSRTTSNEELNERVKSPPPAGYSDS 268
>SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43)
Length = 607
Score = 28.7 bits (61), Expect = 7.0
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Frame = -1
Query: 360 VLAQLHLPGAAPDALAFRRSS---HLHLSTPHKTPPP--AAHKESRP----KARPALHTH 208
+L +LH+PG+AP R+++ H +T H P P AAH + +P +P H+
Sbjct: 17 ILKRLHVPGSAPKYNQPRQTAPKPQPHQAT-HTQPQPNSAAHTQPQPHLAATTQPQPHS- 74
Query: 207 LADLQMRPAANSLMFTANKLSKPAGPQHHAPLPPVPQNALSPSFVSSAPRYQGARH 40
A Q +P + + + PQ H+ + PQ S ++ P+ A H
Sbjct: 75 AATTQPQPHSAATTKPQPHSAATTKPQPHSAVHTKPQ---PHSAATTQPQPHSAAH 127
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 28.3 bits (60), Expect = 9.2
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +2
Query: 200 SAKCV-CSAGRAFGRDS---LCAAGGGVLCGVDRCRCEERRKASASGAAPGRCS 349
++ C+ C R +S LC +G ++ G+ RCR A +GA RC+
Sbjct: 732 ASHCITCGDNRVLSNNSCINLCPSGTFLVKGIHRCRPCHESCAECTGAGHDRCT 785
>SB_19076| Best HMM Match : HECT (HMM E-Value=0)
Length = 2018
Score = 28.3 bits (60), Expect = 9.2
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = -1
Query: 279 PHKTPPPAAHKESRPKARPALHTHLADLQMRPAANSLMFTANKLSKPAGPQHHAP 115
P K+P A +++ P RP+ H H R A + + + HHAP
Sbjct: 871 PLKSPSSATSEDADPHERPSTHRHRGTRHRRRQAR---LVGQEHAAASSVSHHAP 922
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 28.3 bits (60), Expect = 9.2
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Frame = +2
Query: 203 AKCVCSAGRAFGRDSLCAAGGGVL---CGVDRCRCEERRKASASGAAPGRCSWAST 361
AKCVC+ + LCA+ G C +D C + S + G C+ ST
Sbjct: 1357 AKCVCTKSCPLSYEPLCASNGKTFPNQCALDMAAC--KANGSVTFLHTGFCTPCST 1410
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,652,532
Number of Sequences: 59808
Number of extensions: 273666
Number of successful extensions: 1206
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2657535823
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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