Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_N05
(918 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024826-6|AAF60801.1| 379|Caenorhabditis elegans Hypothetical ... 36 0.054
Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical pr... 33 0.38
Z35604-2|CAA84677.1| 809|Caenorhabditis elegans Hypothetical pr... 32 0.50
U19744-1|AAA85704.1| 809|Caenorhabditis elegans integrin beta p... 32 0.50
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 32 0.66
AC024817-53|AAP13744.1| 549|Caenorhabditis elegans Hypothetical... 31 0.87
AC024817-52|AAF59568.4| 611|Caenorhabditis elegans Hypothetical... 31 0.87
U88308-17|AAK68214.1| 657|Caenorhabditis elegans Uncoordinated ... 31 1.5
Z82262-2|CAB05152.1| 248|Caenorhabditis elegans Hypothetical pr... 30 2.7
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 30 2.7
U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase... 30 2.7
AF038615-6|AAB94146.1| 157|Caenorhabditis elegans Ground-like (... 29 4.7
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 29 6.2
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 29 6.2
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr... 29 6.2
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 29 6.2
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 29 6.2
AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ... 28 8.1
AF067219-1|AAC17036.1| 74|Caenorhabditis elegans Hypothetical ... 28 8.1
>AC024826-6|AAF60801.1| 379|Caenorhabditis elegans Hypothetical
protein Y55F3AM.9 protein.
Length = 379
Score = 35.5 bits (78), Expect = 0.054
Identities = 17/34 (50%), Positives = 19/34 (55%)
Frame = -1
Query: 147 SKPAGPQHHAPLPPVPQNALSPSFVSSAPRYQGA 46
S P PQH AP PP PQ A +P +S R GA
Sbjct: 339 SAPVSPQHRAPAPPAPQTARAPP-ETSPTRNSGA 371
>Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical
protein Y49E10.10 protein.
Length = 425
Score = 32.7 bits (71), Expect = 0.38
Identities = 19/60 (31%), Positives = 22/60 (36%)
Frame = -1
Query: 273 KTPPPAAHKESRPKARPALHTHLADLQMRPAANSLMFTANKLSKPAGPQHHAPLPPVPQN 94
K PPP K P A P N + T + KPA AP PP P+N
Sbjct: 181 KAPPPPTTKAPPPPTTKAPPPPTTKAPPPPTTNKEVTTVAPVPKPAPVTAPAPNPPAPEN 240
>Z35604-2|CAA84677.1| 809|Caenorhabditis elegans Hypothetical
protein ZK1058.2 protein.
Length = 809
Score = 32.3 bits (70), Expect = 0.50
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Frame = +2
Query: 131 GPAGLDSLLAVNMSELAAGRICRSAKCVCSAGRAFGRDSLCAAGGGVLCGVDRCR----- 295
GP+GLD L VN+ L C C +S GG ++CGV RC+
Sbjct: 456 GPSGLDETLIVNVKVL--------CDCDCERQDRIVTNSADCNGGDMVCGVCRCKGGNVG 507
Query: 296 --CEERRKASASGAAPGRC 346
CE R ++ A +C
Sbjct: 508 KYCECNRPGMSTAALNEKC 526
>U19744-1|AAA85704.1| 809|Caenorhabditis elegans integrin beta
pat-3 protein.
Length = 809
Score = 32.3 bits (70), Expect = 0.50
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Frame = +2
Query: 131 GPAGLDSLLAVNMSELAAGRICRSAKCVCSAGRAFGRDSLCAAGGGVLCGVDRCR----- 295
GP+GLD L VN+ L C C +S GG ++CGV RC+
Sbjct: 456 GPSGLDETLIVNVKVL--------CDCDCERQDRIVTNSADCNGGDMVCGVCRCKGGNVG 507
Query: 296 --CEERRKASASGAAPGRC 346
CE R ++ A +C
Sbjct: 508 KYCECNRPGMSTAALNEKC 526
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 31.9 bits (69), Expect = 0.66
Identities = 20/60 (33%), Positives = 20/60 (33%)
Frame = +2
Query: 101 GTGGSGAWCCGPAGLDSLLAVNMSELAAGRICRSAKCVCSAGRAFGRDSLCAAGGGVLCG 280
G GG G C G G A A G C C G G C GGG CG
Sbjct: 91 GCGGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGCGGGGGGGCGGGGGGGCG 150
>AC024817-53|AAP13744.1| 549|Caenorhabditis elegans Hypothetical
protein Y54G2A.26b protein.
Length = 549
Score = 31.5 bits (68), Expect = 0.87
Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
Frame = -1
Query: 285 STPHKTPP-PAAHKESRPKA---RPALHTHLADLQMRPAANSLM-FTANKLSKPAG-PQH 124
S P+ PP P H +P+A P +H Q +P N+ T S G PQ
Sbjct: 33 SNPYYQPPVPPQHHHMQPQAPMMSPGMH---GQQQQQPYYNTQSPLTGTPPSMSYGTPQ- 88
Query: 123 HAPLPPVPQNALSPSFVSSAPR--YQGARHHNQTGAG*KKKK 4
P PP N +P F S PR +G+ + GA ++KK
Sbjct: 89 -IPAPPPTSNGSAPMFNFSKPRNSNEGSLTNGGGGAAHRRKK 129
>AC024817-52|AAF59568.4| 611|Caenorhabditis elegans Hypothetical
protein Y54G2A.26a protein.
Length = 611
Score = 31.5 bits (68), Expect = 0.87
Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
Frame = -1
Query: 285 STPHKTPP-PAAHKESRPKA---RPALHTHLADLQMRPAANSLM-FTANKLSKPAG-PQH 124
S P+ PP P H +P+A P +H Q +P N+ T S G PQ
Sbjct: 95 SNPYYQPPVPPQHHHMQPQAPMMSPGMH---GQQQQQPYYNTQSPLTGTPPSMSYGTPQ- 150
Query: 123 HAPLPPVPQNALSPSFVSSAPR--YQGARHHNQTGAG*KKKK 4
P PP N +P F S PR +G+ + GA ++KK
Sbjct: 151 -IPAPPPTSNGSAPMFNFSKPRNSNEGSLTNGGGGAAHRRKK 191
>U88308-17|AAK68214.1| 657|Caenorhabditis elegans Uncoordinated
protein 11, isoform c protein.
Length = 657
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Frame = -1
Query: 279 PHKTPPPAAHKES---RPKARPALHTHLADLQMRPAANSLMFTANK---LSKPAGPQHH- 121
P PPPAAH +P + + A+L P S + ++ PA PQ H
Sbjct: 417 PTNVPPPAAHSAPFGVQPAPQHSAAPFYANLHQAPPMQSQAPNEPENPFITAPAAPQMHN 476
Query: 120 -APLPPVPQNALSPS 79
P+PP P + +P+
Sbjct: 477 APPVPPPPASQGAPA 491
>Z82262-2|CAB05152.1| 248|Caenorhabditis elegans Hypothetical
protein C43F9.5 protein.
Length = 248
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Frame = +2
Query: 173 ELAAGRICRSAKCVCSAGRAF-----GRDSLCAAGGGVLCGVDRCRCEERRKASASGAAP 337
+ AAG+ C + C + G + G ++ A G G CG RC G
Sbjct: 135 DCAAGQTCMNGICCTTTGNEYTGSCGGLPAISACGTGQTCGSFRCTSSNYCCECQYGRTA 194
Query: 338 GRCS 349
G CS
Sbjct: 195 GLCS 198
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical protein
C01G8.9a protein.
Length = 1724
Score = 29.9 bits (64), Expect = 2.7
Identities = 32/109 (29%), Positives = 37/109 (33%), Gaps = 7/109 (6%)
Frame = -1
Query: 339 PGAAPDALAFRRSSHLHLSTPHKTPPPAAHKESRPKARPALHTHLADLQMRPAANSLMFT 160
PGA F P PPPA S P+ P +LA Q R
Sbjct: 739 PGAMRPPAGFAPPPGAPYGYPPGAPPPAGFHPSHPQ-HPQHAQYLAWQQQRYHQQQQHQQ 797
Query: 159 ANKLSKPAGPQHHAPLP--PV----PQNAL-SPSFVSSAPRYQGARHHN 34
+ P GP+ P P PV PQN + P AP GA N
Sbjct: 798 QQQQGAPGGPRPPYPYPGGPVPPGPPQNRMPPPPPAQGAPSPSGAAGSN 846
>U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase ii
(b) subunit protein2 protein.
Length = 1193
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = -1
Query: 249 KESRPKARPALHTHLADLQMRPAANSLMFTANKLSKPA-GPQHHAPLPPVPQNALSPSFV 73
++S P + + HL PA SL F LSKP + AP+P +P A +
Sbjct: 67 EDSPPVELQSENQHLGTDMENPAKFSLKFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLT 126
Query: 72 SSAPRY 55
++P Y
Sbjct: 127 YASPLY 132
>AF038615-6|AAB94146.1| 157|Caenorhabditis elegans Ground-like (grd
related) protein19 protein.
Length = 157
Score = 29.1 bits (62), Expect = 4.7
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 77 NEGDSAFCGTGGSGAWCCGP 136
N+G CG GG G CC P
Sbjct: 26 NDGCGCGCGGGGGGGGCCAP 45
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
F25H8.3 protein.
Length = 2165
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = -2
Query: 422 CETKSCPGASTCSGALGRWTRCWPSCTCRAPRRTRW 315
C + CP + S + WT C SC RR W
Sbjct: 1533 CNEELCPPLTNNSWQISPWTHCSVSCGGGVQRRKIW 1568
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = -2
Query: 422 CETKSCPGASTCSGALGRWTRCWPSCTCRAPRRTRW 315
C + CP + S + WT C SC RR W
Sbjct: 1533 CNEELCPPLTNNSWQISPWTHCSVSCGGGVQRRKIW 1568
>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
K08F8.6 protein.
Length = 2862
Score = 28.7 bits (61), Expect = 6.2
Identities = 22/75 (29%), Positives = 28/75 (37%)
Frame = -1
Query: 273 KTPPPAAHKESRPKARPALHTHLADLQMRPAANSLMFTANKLSKPAGPQHHAPLPPVPQN 94
K P A + A P L T +A + P T + S AGP H P+ P
Sbjct: 1189 KRPSQFAIPSTSTAAHPGLTTPMASIFQSPTMPP-PHTPSPFS--AGPMSHHPMGPPAYP 1245
Query: 93 ALSPSFVSSAPRYQG 49
SF + P Y G
Sbjct: 1246 GTPGSFPPTTPTYPG 1260
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 28.7 bits (61), Expect = 6.2
Identities = 22/75 (29%), Positives = 28/75 (37%)
Frame = -1
Query: 273 KTPPPAAHKESRPKARPALHTHLADLQMRPAANSLMFTANKLSKPAGPQHHAPLPPVPQN 94
K P A + A P L T +A + P T + S AGP H P+ P
Sbjct: 1189 KRPSQFAIPSTSTAAHPGLTTPMASIFQSPTMPP-PHTPSPFS--AGPMSHHPMGPPAYP 1245
Query: 93 ALSPSFVSSAPRYQG 49
SF + P Y G
Sbjct: 1246 GTPGSFPPTTPTYPG 1260
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 28.7 bits (61), Expect = 6.2
Identities = 22/75 (29%), Positives = 28/75 (37%)
Frame = -1
Query: 273 KTPPPAAHKESRPKARPALHTHLADLQMRPAANSLMFTANKLSKPAGPQHHAPLPPVPQN 94
K P A + A P L T +A + P T + S AGP H P+ P
Sbjct: 1189 KRPSQFAIPSTSTAAHPGLTTPMASIFQSPTMPP-PHTPSPFS--AGPMSHHPMGPPAYP 1245
Query: 93 ALSPSFVSSAPRYQG 49
SF + P Y G
Sbjct: 1246 GTPGSFPPTTPTYPG 1260
>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
protein Y47D3B.7 protein.
Length = 1113
Score = 28.3 bits (60), Expect = 8.1
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Frame = -1
Query: 300 SHLHLSTPHKTP-PPAAHKESRPKARPALHTHLADLQMRPAANSLMFTANKLSKPAGPQH 124
+H LS PH T P + E+ + + D P+ S ++ + S P H
Sbjct: 177 THAMLSPPHHTSMTPQPYTEAMEHINGYMSPY--DQAQGPSGPSY-YSQHHQSPPPHHHH 233
Query: 123 HAPLPPV---PQNALSPSFVSSAP 61
H P+P + P+ SPS + AP
Sbjct: 234 HHPMPKIHENPEQVASPS-IEDAP 256
>AF067219-1|AAC17036.1| 74|Caenorhabditis elegans Hypothetical
protein R12E2.15 protein.
Length = 74
Score = 28.3 bits (60), Expect = 8.1
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +3
Query: 186 GASAGRPSACAAPAEPSGGTPC 251
G AG C PA+P G PC
Sbjct: 22 GGGAGGAGGCCPPAQPGCGNPC 43
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,898,970
Number of Sequences: 27780
Number of extensions: 192789
Number of successful extensions: 1131
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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