Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_N05
(918 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g56890.1 68418.m07099 protein kinase family protein contains ... 44 1e-04
At1g77310.1 68414.m09004 wound-responsive protein, putative simi... 33 0.26
At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family... 31 0.81
At3g11690.1 68416.m01433 expressed protein 31 0.81
At5g45330.1 68418.m05564 expressed protein ; expression supporte... 31 1.4
At3g10070.1 68416.m01207 transcription initiation factor IID (TF... 31 1.4
At1g76930.2 68414.m08956 proline-rich extensin-like family prote... 29 3.3
At1g76930.1 68414.m08955 proline-rich extensin-like family prote... 29 3.3
At5g63970.1 68418.m08032 copine-related low similarity to SP|Q99... 29 4.3
At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family... 29 4.3
At4g23060.1 68417.m03325 calmodulin-binding family protein conta... 29 4.3
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 29 4.3
At4g08410.1 68417.m01390 proline-rich extensin-like family prote... 29 4.3
At4g08400.1 68417.m01388 proline-rich extensin-like family prote... 29 4.3
At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family... 29 4.3
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 29 5.7
At5g42940.1 68418.m05235 zinc finger (C3HC4-type RING finger) fa... 29 5.7
At3g60730.1 68416.m06794 pectinesterase family protein contains ... 29 5.7
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id... 29 5.7
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 29 5.7
At1g23540.1 68414.m02960 protein kinase family protein contains ... 28 7.5
At5g64300.1 68418.m08077 riboflavin biosynthesis protein, putati... 28 10.0
At5g64290.1 68418.m08076 oxoglutarate/malate translocator, putat... 28 10.0
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 28 10.0
At2g40070.1 68415.m04923 expressed protein 28 10.0
>At5g56890.1 68418.m07099 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 1113
Score = 44.0 bits (99), Expect = 1e-04
Identities = 44/141 (31%), Positives = 58/141 (41%), Gaps = 20/141 (14%)
Frame = -1
Query: 441 PVPMAXLRDEELPRREHLFRRARPLDEVLAQLHLPGAAPDALAFRRSSHLHLSTPHKTPP 262
P P D + P A+PL + P AP A F R SH H S P TPP
Sbjct: 266 PPPSDNGDDSKSPGAAPANETAKPLPVFPHKASPPSIAPSAPKFNRHSH-HTS-PSTTPP 323
Query: 261 PAA------HKESRPKARPALHTHLADLQMR------PAANSL---MFTANKLSK----- 142
P + H S P P L +H Q R PA + L + + K ++
Sbjct: 324 PDSTPSNVHHHPSSPSP-PPLSSHHQHHQERKKIADSPAPSPLPPHLISPKKSNRKGSMT 382
Query: 141 PAGPQHHAPLPPVPQNALSPS 79
P HHAP PP+P + +SP+
Sbjct: 383 PPPQSHHAPSPPIPDSLISPA 403
Score = 31.5 bits (68), Expect = 0.81
Identities = 28/94 (29%), Positives = 37/94 (39%), Gaps = 5/94 (5%)
Frame = -1
Query: 303 SSHLHLSTPHK-TP---PPAAHKESRPKARPALHT-HLADLQMRPAANSLMFTANKLSKP 139
SS + STP K +P PP H P PA+ H A+ P + +
Sbjct: 223 SSPVPTSTPTKGSPRRNPPTTHPVF-PIESPAVSPDHAANPVKHPPPSDNGDDSKSPGAA 281
Query: 138 AGPQHHAPLPPVPQNALSPSFVSSAPRYQGARHH 37
+ PLP P A PS SAP++ HH
Sbjct: 282 PANETAKPLPVFPHKASPPSIAPSAPKFNRHSHH 315
>At1g77310.1 68414.m09004 wound-responsive protein, putative similar
to wound-responsive protein 14.05 (GI:16506638)
[Castanea sativa]
Length = 699
Score = 33.1 bits (72), Expect = 0.26
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Frame = -1
Query: 375 RPLDEVLAQLHLPGAAPDALAFRRSSHLHLSTPHKT----PPPAAHKESR--PKAR 226
R + L + HLP P LA +R +HL T HK P AHK+++ PKA+
Sbjct: 634 RKTEPALEETHLPAEKPLVLALKRQTHLKSKT-HKQVQVHPQSKAHKQAQVHPKAK 688
>At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family
protein
Length = 477
Score = 31.5 bits (68), Expect = 0.81
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Frame = -1
Query: 339 PGAAPDALAFRRSSH--LHLSTPHKTPPPAAHKESRPKARPALHTHLADLQMRPAANSLM 166
P +P F +S H P + PP +++ RPK AL+ H A P +
Sbjct: 351 PSLSPPTKGFAPASAPTKHSPLPPRNPP-CPYEQRRPKGNSALNHHTAPPTPAPHRSQPH 409
Query: 165 FTANKLSKPAGPQHHA-----PLPPVPQNALSPSFVSS 67
A PA P+HHA PLP V + P SS
Sbjct: 410 PPA---PNPAPPRHHAIPVSSPLPHVVFAHIPPPSKSS 444
>At3g11690.1 68416.m01433 expressed protein
Length = 252
Score = 31.5 bits (68), Expect = 0.81
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +2
Query: 95 FCG--TGGSGA-WCCGPAGLDSLLAVNMSELAAGRICRSA 205
FCG T A WCC P GL +LL + + ++ G ICR A
Sbjct: 57 FCGGTTASCAAVWCCCPCGLVNLLVLAIYKVPKG-ICRRA 95
>At5g45330.1 68418.m05564 expressed protein ; expression supported
by MPSS
Length = 571
Score = 30.7 bits (66), Expect = 1.4
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 14/98 (14%)
Frame = -1
Query: 306 RSSHLHLSTPHKTPPPAAHK--------ESRPKARPALHTHLADLQMRPAANSLMF---- 163
+S+H H S PH+ P A++ P++ + L Q MF
Sbjct: 330 QSNHPHRSIPHELPAVASNSAPVIPGPLSKSPESFFDMDPSLQSRQQMVYRGQEMFAATN 389
Query: 162 --TANKLSKPAGPQHHAPLPPVPQNALSPSFVSSAPRY 55
+AN S+ P++HAPL P+P +A SS+ Y
Sbjct: 390 PASANVPSQSFAPRNHAPLLPLPVSAHQSRIPSSSIEY 427
>At3g10070.1 68416.m01207 transcription initiation factor IID
(TFIID) subunit A family protein similar to hypothetical
protein GB:CAB10099 [Schizosaccharomyces pombe];
contains Pfam profile PF03847: Transcription initiation
factor TFIID subunit A
Length = 539
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Frame = -1
Query: 291 HLSTPHKTPPPAAHKESRPKARPALHTHLADLQMRPAANSLMFTANKLSKPAGPQHH--- 121
HLS P PPP A+ SRP + + +TH + ++S ++ S P Q
Sbjct: 82 HLSQPLVRPPPQAY--SRPWQQHSSYTHFSSASSPLLSSSSAPASSSSSLPISGQQRGGM 139
Query: 120 ---APLPPVPQNALSPS 79
P P+P + +PS
Sbjct: 140 AIGVPASPIPSPSPTPS 156
>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 256
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Frame = -1
Query: 291 HLSTP--HKTPPPAAHKESRPKARPALHTHLADLQMRPAANSL---MFTANKLSKPAGPQ 127
H S P +K+PPP S P + LH H + + +L FT + L P
Sbjct: 140 HYSPPPVYKSPPPPVKHYSPPPSYTTLHHHRFTTHLLQSYTTLHHHRFTTHLLQLYTTPH 199
Query: 126 HH 121
HH
Sbjct: 200 HH 201
Score = 28.7 bits (61), Expect = 5.7
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Frame = -1
Query: 276 HKTPPPAAHKESRPKARPALHTHLADLQMRPAANSLMFTANKLSKPAGP--QHHAPLPPV 103
+K+PPP +K P P H + P ++ + K P +H++P PPV
Sbjct: 91 YKSPPPPVYKSPPP---PVKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKHYSP-PPV 146
Query: 102 PQNALSP-SFVSSAPRYQGARHHNQT 28
++ P S P Y HH T
Sbjct: 147 YKSPPPPVKHYSPPPSYTTLHHHRFT 172
>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 293
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Frame = -1
Query: 291 HLSTP--HKTPPPAAHKESRPKARPALHTHLADLQMRPAANSL---MFTANKLSKPAGPQ 127
H S P +K+PPP S P + LH H + + +L FT + L P
Sbjct: 140 HYSPPPVYKSPPPPVKHYSPPPSYTTLHHHRFTTHLLQSYTTLHHHRFTTHLLQLYTTPH 199
Query: 126 HH 121
HH
Sbjct: 200 HH 201
Score = 28.7 bits (61), Expect = 5.7
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Frame = -1
Query: 276 HKTPPPAAHKESRPKARPALHTHLADLQMRPAANSLMFTANKLSKPAGP--QHHAPLPPV 103
+K+PPP +K P P H + P ++ + K P +H++P PPV
Sbjct: 91 YKSPPPPVYKSPPP---PVKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKHYSP-PPV 146
Query: 102 PQNALSP-SFVSSAPRYQGARHHNQT 28
++ P S P Y HH T
Sbjct: 147 YKSPPPPVKHYSPPPSYTTLHHHRFT 172
>At5g63970.1 68418.m08032 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 367
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/62 (29%), Positives = 25/62 (40%)
Frame = -1
Query: 246 ESRPKARPALHTHLADLQMRPAANSLMFTANKLSKPAGPQHHAPLPPVPQNALSPSFVSS 67
E + A+ LA L P + N+ + QHH PLPP P+ + V S
Sbjct: 241 EHKDAAKKEAAFALAALMEIPFQYKATLSLNRKPVRSSHQHHKPLPPPPEVIERDNAVRS 300
Query: 66 AP 61
P
Sbjct: 301 VP 302
>At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family
protein Common family members: At5g26070, At5g19800,
At1g72790 [Arabidopsis thaliana]
Length = 575
Score = 29.1 bits (62), Expect = 4.3
Identities = 23/88 (26%), Positives = 32/88 (36%)
Frame = -1
Query: 285 STPHKTPPPAAHKESRPKARPALHTHLADLQMRPAANSLMFTANKLSKPAGPQHHAPLPP 106
+TP PPP + + R DLQ + F P+ P P PP
Sbjct: 250 ATPPPPPPPPPVEVPQKPRRTHRSVRNRDLQENAKRSETKFKRTFQPPPSPPP--PPPPP 307
Query: 105 VPQNALSPSFVSSAPRYQGARHHNQTGA 22
PQ P ++ PR QG ++ A
Sbjct: 308 PPQ----PLIAATPPRKQGTLQRRKSNA 331
>At4g23060.1 68417.m03325 calmodulin-binding family protein contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 543
Score = 29.1 bits (62), Expect = 4.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 285 STPHKTPPPAAHKESRPKAR 226
S P+ TPPP +H +S P+ R
Sbjct: 63 SLPNSTPPPPSHHQSSPRRR 82
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 29.1 bits (62), Expect = 4.3
Identities = 21/78 (26%), Positives = 33/78 (42%)
Frame = -1
Query: 294 LHLSTPHKTPPPAAHKESRPKARPALHTHLADLQMRPAANSLMFTANKLSKPAGPQHHAP 115
+H S+P PPP H S P + H + P+A + PA HH+P
Sbjct: 667 VHYSSP---PPPEVHYHSPPPSP----VHYSSPPPPPSA-----PCEESPPPAPVVHHSP 714
Query: 114 LPPVPQNALSPSFVSSAP 61
PP+ ++ P + +P
Sbjct: 715 PPPMVHHSPPPPVIHQSP 732
>At4g08410.1 68417.m01390 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965;
Length = 707
Score = 29.1 bits (62), Expect = 4.3
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Frame = -1
Query: 339 PGAAPDALAFRRSSHLHLS---TPHKTPPPAAHKESRPKARPALHTHLADLQMRPAANSL 169
P +P + SH H TPH P P+ + S P P+ ++ + + S
Sbjct: 51 PYTSPQTPHYNSPSHEHKIPKYTPH--PKPSIYSSSPP---PSYYSPSPKVDYKSPPPSY 105
Query: 168 MFTANKLSKPAGPQHHAPLPPVPQNALSPSFVSSAP 61
+++ S P P +++P P V +L P +V S+P
Sbjct: 106 VYS----SPP--PPYYSPSPKVDYKSLPPPYVYSSP 135
>At4g08400.1 68417.m01388 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 513
Score = 29.1 bits (62), Expect = 4.3
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Frame = -1
Query: 339 PGAAPDALAFRRSSHLHLS---TPHKTPPPAAHKESRPKARPALHTHLADLQMRPAANSL 169
P +P + SH H TPH P P+ + S P P+ ++ + + S
Sbjct: 33 PYTSPQTPHYNSPSHEHKIPKYTPH--PKPSIYSSSPP---PSYYSPSPKVDYKSPPPSY 87
Query: 168 MFTANKLSKPAGPQHHAPLPPVPQNALSPSFVSSAP 61
+++ S P P +++P P V +L P +V S+P
Sbjct: 88 VYS----SPP--PPYYSPSPKVDYKSLPPPYVYSSP 117
>At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 589
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -1
Query: 141 PAGPQHHAPLPPVPQNALSPSFVSSAPRYQGARHHNQ 31
P Q AP PP P +A P V PR+QG H +
Sbjct: 64 PQFNQLQAPPPPPPPSA-PPPLVPDPPRHQGPNDHEK 99
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 28.7 bits (61), Expect = 5.7
Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 1/92 (1%)
Frame = -1
Query: 300 SHLHLSTPHKTPPPAAHKESRPKARPALHTHLADLQMRPAANSLMFTAN-KLSKPAGPQH 124
SH TP +P AH S A H+ PA + A K P+
Sbjct: 230 SHSPAHTPSHSP---AHAPSHSPAHAPSHSPAHAPSHSPAHSPSHSPATPKSPSPSSSPA 286
Query: 123 HAPLPPVPQNALSPSFVSSAPRYQGARHHNQT 28
+P P P SPS VSS Q A +Q+
Sbjct: 287 QSPATPSPMTPQSPSPVSSPSPDQSAAPSDQS 318
>At5g42940.1 68418.m05235 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 691
Score = 28.7 bits (61), Expect = 5.7
Identities = 21/85 (24%), Positives = 33/85 (38%)
Frame = -1
Query: 297 HLHLSTPHKTPPPAAHKESRPKARPALHTHLADLQMRPAANSLMFTANKLSKPAGPQHHA 118
+LHL P E A P + R N + +A+ +S+ G
Sbjct: 362 NLHLDETRSRSIPGNTLEIPMFAAPEVGNFARSQSSRNVTNGNLNSASSVSR-TGSTTSV 420
Query: 117 PLPPVPQNALSPSFVSSAPRYQGAR 43
P PP P + L+ + ++P YQ R
Sbjct: 421 PPPPPPSSNLAWTSYQNSPHYQRRR 445
>At3g60730.1 68416.m06794 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 519
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -1
Query: 324 DALAFRRSSHLHLSTPHKTPPPAAHKESRPKARPALHTH 208
+ALAF + S H+ P H +RPK RP H
Sbjct: 137 EALAFYKKSRGHMKKRLHGPARQGHGPTRPKHRPTRPNH 175
>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
identical to auxin transport protein; BIG [Arabidopsis
thaliana] GI:21779966; contains Pfam profiles PF02207:
Putative zinc finger in N-recognin, PF00569: Zinc finger
ZZ type
Length = 5098
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = +2
Query: 194 CRSAKCVCSAGR--AFGRDS--LCAAGGGVLCGVDRCRCEERRKASASGAAPGR 343
C VC G + R S C G G + G C+C + RK + +G+AP R
Sbjct: 1604 CSVCAKVCHRGHRVVYSRSSRFFCDCGAGGVRG-SSCQCLKPRKYNGNGSAPAR 1656
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Frame = -1
Query: 270 TPPPAAHKESRP-KARPALHTHLADLQMR----PAANSLMFTANKLSKPAGPQHHAPLPP 106
TPPP + K S +A P + R P ++ + + P P + P PP
Sbjct: 455 TPPPPSSKMSPSFRATPPPPSSKMSPSFRATPPPPSSKMSPSVKAYPPPPPPPEYEPSPP 514
Query: 105 VPQNALSPSFVSSAP 61
P + +SPS + P
Sbjct: 515 PPSSEMSPSVRAYPP 529
>At1g23540.1 68414.m02960 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 720
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = -1
Query: 282 TPHKTPPPAAHKESRPKARPALHTHLADLQMRPAANSLMFTANK-LSKPAGPQHHAPLPP 106
+P +PP + P P+ ++ L + P + ++ LS+P+ P + LPP
Sbjct: 7 SPSSSPPAPPADTAPPPETPSENSALPPVDSSPPSPPADSSSTPPLSEPSTPPPDSQLPP 66
Query: 105 VPQNALSPSFVSSAP 61
+P ++ P S P
Sbjct: 67 LP--SILPPLTDSPP 79
>At5g64300.1 68418.m08077 riboflavin biosynthesis protein, putative
(RIBA) similar to SP|P47924 {Arabidopsis thaliana},
SP|P51695 Riboflavin biosynthesis protein ribA
[Includes: GTP cyclohydrolase II (EC 3.5.4.25);
3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP
synthase)] {Bacillus amyloliquefaciens}; contains Pfam
profiles PF00925: GTP cyclohydrolase II, PF00926:
3,4-dihydroxy-2-butanone 4-phosphate synthase
Length = 384
Score = 27.9 bits (59), Expect = 10.0
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +2
Query: 140 GLDSLLAVNMSELAAGRICRSAKCVCSAGRAFGRDSLCAAGGGVL 274
G D L+ V+ SE G I SA+C C A + A G GVL
Sbjct: 214 GQDILVRVH-SECLTGDIFGSARCDCGNQLALSMQQIEATGRGVL 257
>At5g64290.1 68418.m08076 oxoglutarate/malate translocator, putative
similar to SWISS-PROT:Q41364 2-oxoglutarate/malate
translocator, chloroplast precursor. [Spinach]{Spinacia
oleracea}
Length = 563
Score = 27.9 bits (59), Expect = 10.0
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Frame = -1
Query: 288 LSTPHKTPPPAAHKESRPKAR-PALHTHLADLQMRPAANSLMFTANKLSK--PAGPQHHA 118
LS H P R +R P L L ++P + L+ + S A PQ +A
Sbjct: 18 LSHHHHHHPSRLSLLRRTSSRSPPSTISLRSLSVQPLSFPLLKPIPRFSTRIAAAPQDNA 77
Query: 117 PLPPVPQNALSPS 79
P PP P + SPS
Sbjct: 78 PPPPPPSPSPSPS 90
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = -1
Query: 189 RPAANSLMFTANKLSKPAGPQHHAPLPPVPQNALSPSFVSSAP 61
RP S K + P P H+P PP P ++ P S P
Sbjct: 623 RPQPPSPSTEETKTTSPQSPPVHSPPPPPPVHSPPPPVFSPPP 665
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 27.9 bits (59), Expect = 10.0
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = -1
Query: 291 HLSTPHKTPPPAAHKESRPKARPALHTHLADLQMRPAANSLMFTAN-KLSKPAGPQHHAP 115
HL++ +T P S RP+ P S TAN K S+P+ P A
Sbjct: 154 HLTSRQQTSSPGLSSSSGASRRPSSSGGPGSRPATPTGRSSTLTANSKSSRPSTPTSRAT 213
Query: 114 LPPVPQNALSPS 79
+ + +L+ S
Sbjct: 214 VSSATRPSLTNS 225
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,435,056
Number of Sequences: 28952
Number of extensions: 175280
Number of successful extensions: 975
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2178500352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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