Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_N04
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    31   0.25 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.0  
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    27   3.1  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   5.4  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    25   9.4  

>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 21/53 (39%), Positives = 24/53 (45%)
 Frame = -1

Query: 619 PSMSRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRST 461
           PS     FR P+    PP   SRS S +  +   RSQL   S     STS ST
Sbjct: 301 PSKPEIPFRHPTSKPLPPKPLSRSKSSSLSRNQTRSQLNDLS-AENDSTSNST 352


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 591  PRQGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 475
            P  G    P+P  +A PVP+    A PS    R ++PSP
Sbjct: 1222 PSAGLPPVPVPTAKAPPVPAPSSEA-PSVSTPRSSVPSP 1259


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 576 WYLDGVRNWLLDMDGHWA-VNVYFNGVGHWFFYRVW 680
           WY   ++ W LD     A V+ +F  +GH+FF   W
Sbjct: 77  WYFRDLQWWGLDYPPLTAYVSWFFGIIGHYFFNPEW 112


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 525  LFYWVRDVLLDGVRGGHWYLDGVRNWLLDMDGHWAVNVYFN 647
            L Y++ D+     RG H+  D +    L MD   A+N YFN
Sbjct: 1546 LIYFILDIFQ--FRGLHFAYDEIDTDQLSMDLQDALNAYFN 1584


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 617 RALGGQRVL*RGRALVFLPGMGRASRRGKALVWEYARG 730
           R LGG +   RG   +    +G ASR G   VWE   G
Sbjct: 8   RELGGHKQDVRGVCSISNELIGSASRDGTYSVWEQING 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,413,164
Number of Sequences: 5004
Number of extensions: 41328
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)