Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_N02
         (808 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    26   0.31 
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    26   0.31 
AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A prot...    26   0.31 
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    26   0.31 
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    24   1.6  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   6.6  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   8.7  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    21   8.7  

>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 630 APVISAEKAYHEQLS-VAEITNACFEPAXPDGEMRP 526
           A +  A + YH+  S V +  N+C +PA P G+  P
Sbjct: 93  ASMAVAAQFYHQAASAVVDPLNSCSQPAAPGGQPIP 128


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 630 APVISAEKAYHEQLS-VAEITNACFEPAXPDGEMRP 526
           A +  A + YH+  S V +  N+C +PA P G+  P
Sbjct: 152 ASMAVAAQFYHQAASAVVDPLNSCSQPAAPGGQPIP 187


>AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A
           protein.
          Length = 150

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 630 APVISAEKAYHEQLS-VAEITNACFEPAXPDGEMRP 526
           A +  A + YH+  S V +  N+C +PA P G+  P
Sbjct: 93  ASMAVAAQFYHQAASAVVDPLNSCSQPAAPGGQPIP 128


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 630 APVISAEKAYHEQLS-VAEITNACFEPAXPDGEMRP 526
           A +  A + YH+  S V +  N+C +PA P G+  P
Sbjct: 152 ASMAVAAQFYHQAASAVVDPLNSCSQPAAPGGQPIP 187


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 488 GTAYSKPCTCHDGGRISPSGLAGS 559
           G A++ P   HD G  SP G  G+
Sbjct: 50  GNAHTGPTGTHDAGFPSPRGALGA 73


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 110 PHPRLQRSPCRLLRNPSRGQPGP 178
           PHP L   P  L  +P+   PGP
Sbjct: 232 PHPGLSPHPPHLSSHPAIVTPGP 254


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 110 PHPRLQRSPCRLLRNPSRGQPGP 178
           PHP L   P  L  +P+   PGP
Sbjct: 124 PHPGLSPHPPHLSSHPAIVTPGP 146


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 445  PSKPSVLSNSSTGVQPVSRSVSTTSHP 365
            P+KPS    S+T       + STT+ P
Sbjct: 1169 PTKPSYRPPSTTNHWQTKTTTSTTTRP 1195


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 572 QTHASSPPXQMVKCD 528
           + HA S P Q  KCD
Sbjct: 251 RNHAGSKPFQCNKCD 265


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 572 QTHASSPPXQMVKCD 528
           + HA S P Q  KCD
Sbjct: 9   RNHAGSKPFQCNKCD 23


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,228
Number of Sequences: 336
Number of extensions: 3921
Number of successful extensions: 24
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21999028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)