Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_N02
(808 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 281 5e-76
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 281 5e-76
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 281 5e-76
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 280 7e-76
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 280 7e-76
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 277 6e-75
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 179 2e-45
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 99 3e-21
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 97 1e-20
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 97 2e-20
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 97 2e-20
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 97 2e-20
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 97 2e-20
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 94 9e-20
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 94 9e-20
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 94 1e-19
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 52 6e-07
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 49 4e-06
At5g33320.1 68418.m03955 triose phosphate/phosphate translocator... 33 0.29
At3g62210.1 68416.m06989 expressed protein contains Pfam profile... 31 1.2
At2g46530.2 68415.m05803 transcriptional factor B3 family protei... 30 2.1
At2g46530.1 68415.m05802 transcriptional factor B3 family protei... 30 2.1
At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to ... 29 4.8
At1g29200.1 68414.m03573 hypothetical protein contains Pfam PF03... 29 4.8
At1g51660.1 68414.m05820 mitogen-activated protein kinase kinase... 28 6.3
At3g26855.1 68416.m03360 hypothetical protein 28 8.4
At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein ... 28 8.4
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 281 bits (688), Expect = 5e-76
Identities = 122/144 (84%), Positives = 134/144 (93%)
Frame = -3
Query: 563 ASSPPXQMVKCDPRHGKYMACCMLYRGDVVPRDVNAAIATIKTKRTIQFVDWCPTGFKVG 384
A P M KCDPRHGKYMACC++YRGDVVP+DVNAA+ TIKTKRTIQFVDWCPTGFK G
Sbjct: 295 AFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCG 354
Query: 383 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 204
INYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGME
Sbjct: 355 INYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGME 414
Query: 203 EGEFSEAREDLAALEKDYEEVGMD 132
EGEFSEAREDLAALEKDYEEVG +
Sbjct: 415 EGEFSEAREDLAALEKDYEEVGAE 438
Score = 68.1 bits (159), Expect = 6e-12
Identities = 31/37 (83%), Positives = 34/37 (91%)
Frame = -2
Query: 660 PRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 550
PRIHF L +YAPVISAEKA+HEQLSVAEITN+ FEPA
Sbjct: 263 PRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPA 299
Score = 36.7 bits (81), Expect = 0.018
Identities = 20/39 (51%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 787 EXPTYPNLXXXXDXFXLD-HCFLRFDGALNXDLXEFQTN 674
E PTY NL LRFDGALN D+ EFQTN
Sbjct: 220 ERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTN 258
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 281 bits (688), Expect = 5e-76
Identities = 122/144 (84%), Positives = 134/144 (93%)
Frame = -3
Query: 563 ASSPPXQMVKCDPRHGKYMACCMLYRGDVVPRDVNAAIATIKTKRTIQFVDWCPTGFKVG 384
A P M KCDPRHGKYMACC++YRGDVVP+DVNAA+ TIKTKRTIQFVDWCPTGFK G
Sbjct: 295 AFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCG 354
Query: 383 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 204
INYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGME
Sbjct: 355 INYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGME 414
Query: 203 EGEFSEAREDLAALEKDYEEVGMD 132
EGEFSEAREDLAALEKDYEEVG +
Sbjct: 415 EGEFSEAREDLAALEKDYEEVGAE 438
Score = 68.1 bits (159), Expect = 6e-12
Identities = 31/37 (83%), Positives = 34/37 (91%)
Frame = -2
Query: 660 PRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 550
PRIHF L +YAPVISAEKA+HEQLSVAEITN+ FEPA
Sbjct: 263 PRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPA 299
Score = 36.7 bits (81), Expect = 0.018
Identities = 20/39 (51%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 787 EXPTYPNLXXXXDXFXLD-HCFLRFDGALNXDLXEFQTN 674
E PTY NL LRFDGALN D+ EFQTN
Sbjct: 220 ERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTN 258
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 281 bits (688), Expect = 5e-76
Identities = 122/144 (84%), Positives = 134/144 (93%)
Frame = -3
Query: 563 ASSPPXQMVKCDPRHGKYMACCMLYRGDVVPRDVNAAIATIKTKRTIQFVDWCPTGFKVG 384
A P M KCDPRHGKYMACC++YRGDVVP+DVNAA+ TIKTKRTIQFVDWCPTGFK G
Sbjct: 295 AFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCG 354
Query: 383 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME 204
INYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGME
Sbjct: 355 INYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGME 414
Query: 203 EGEFSEAREDLAALEKDYEEVGMD 132
EGEFSEAREDLAALEKDYEEVG +
Sbjct: 415 EGEFSEAREDLAALEKDYEEVGAE 438
Score = 68.1 bits (159), Expect = 6e-12
Identities = 31/37 (83%), Positives = 34/37 (91%)
Frame = -2
Query: 660 PRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 550
PRIHF L +YAPVISAEKA+HEQLSVAEITN+ FEPA
Sbjct: 263 PRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPA 299
Score = 36.7 bits (81), Expect = 0.018
Identities = 20/39 (51%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 787 EXPTYPNLXXXXDXFXLD-HCFLRFDGALNXDLXEFQTN 674
E PTY NL LRFDGALN D+ EFQTN
Sbjct: 220 ERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTN 258
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 280 bits (687), Expect = 7e-76
Identities = 121/141 (85%), Positives = 132/141 (93%)
Frame = -3
Query: 554 PPXQMVKCDPRHGKYMACCMLYRGDVVPRDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 375
P M KCDPRHGKYMACC++YRGDVVP+DVNAA+ TIKTKRT+QFVDWCPTGFK GINY
Sbjct: 298 PASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINY 357
Query: 374 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGE 195
QPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGE
Sbjct: 358 QPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGE 417
Query: 194 FSEAREDLAALEKDYEEVGMD 132
FSEAREDLAALEKDYEEVG +
Sbjct: 418 FSEAREDLAALEKDYEEVGAE 438
Score = 66.1 bits (154), Expect = 3e-11
Identities = 31/37 (83%), Positives = 32/37 (86%)
Frame = -2
Query: 660 PRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 550
PRIHF L +YAPVISA KAYHEQLSV EITNA FEPA
Sbjct: 263 PRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPA 299
Score = 38.3 bits (85), Expect = 0.006
Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -1
Query: 793 DXEXPTYPNLXXXXDXFXLD-HCFLRFDGALNXDLXEFQTN 674
D E PTY NL LRFDGA+N D+ EFQTN
Sbjct: 218 DIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTN 258
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 280 bits (687), Expect = 7e-76
Identities = 121/141 (85%), Positives = 132/141 (93%)
Frame = -3
Query: 554 PPXQMVKCDPRHGKYMACCMLYRGDVVPRDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 375
P M KCDPRHGKYMACC++YRGDVVP+DVNAA+ TIKTKRT+QFVDWCPTGFK GINY
Sbjct: 298 PASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINY 357
Query: 374 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGE 195
QPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGE
Sbjct: 358 QPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGE 417
Query: 194 FSEAREDLAALEKDYEEVGMD 132
FSEAREDLAALEKDYEEVG +
Sbjct: 418 FSEAREDLAALEKDYEEVGAE 438
Score = 66.1 bits (154), Expect = 3e-11
Identities = 31/37 (83%), Positives = 32/37 (86%)
Frame = -2
Query: 660 PRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 550
PRIHF L +YAPVISA KAYHEQLSV EITNA FEPA
Sbjct: 263 PRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPA 299
Score = 38.3 bits (85), Expect = 0.006
Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -1
Query: 793 DXEXPTYPNLXXXXDXFXLD-HCFLRFDGALNXDLXEFQTN 674
D E PTY NL LRFDGA+N D+ EFQTN
Sbjct: 218 DIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTN 258
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 277 bits (679), Expect = 6e-75
Identities = 121/151 (80%), Positives = 132/151 (87%)
Frame = -3
Query: 590 FPSPRSQTHASSPPXQMVKCDPRHGKYMACCMLYRGDVVPRDVNAAIATIKTKRTIQFVD 411
F P T P M KCDPRHGKYMACC++YRGDVVP+DVN A+A IK KRTIQFVD
Sbjct: 286 FSVPEITTSVFEPSNMMAKCDPRHGKYMACCLMYRGDVVPKDVNTAVAAIKAKRTIQFVD 345
Query: 410 WCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFV 231
WCPTGFK GINYQPP+VVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMY+KRAFV
Sbjct: 346 WCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFV 405
Query: 230 HWYVGEGMEEGEFSEAREDLAALEKDYEEVG 138
HWYVGEGMEEGEFSEAREDLAALEKDYEEVG
Sbjct: 406 HWYVGEGMEEGEFSEAREDLAALEKDYEEVG 436
Score = 58.4 bits (135), Expect = 5e-09
Identities = 26/37 (70%), Positives = 30/37 (81%)
Frame = -2
Query: 660 PRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 550
PRIHF L +YAPVIS+ KAYHEQ SV EIT + FEP+
Sbjct: 263 PRIHFMLSSYAPVISSAKAYHEQFSVPEITTSVFEPS 299
Score = 37.5 bits (83), Expect = 0.010
Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -1
Query: 793 DXEXPTYPNLXXXXDXFXLD-HCFLRFDGALNXDLXEFQTN 674
D E PTY NL LRFDGA+N D+ EFQTN
Sbjct: 218 DIERPTYSNLNRLISQTISSLTTSLRFDGAINVDITEFQTN 258
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 179 bits (436), Expect = 2e-45
Identities = 76/92 (82%), Positives = 84/92 (91%)
Frame = -3
Query: 563 ASSPPXQMVKCDPRHGKYMACCMLYRGDVVPRDVNAAIATIKTKRTIQFVDWCPTGFKVG 384
A P M KCDPRHGKYMACC++YRGDVVP+DVNAA+ TIKTKRTIQFVDWCPTGFK G
Sbjct: 295 AFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCG 354
Query: 383 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAE 288
INYQPPTVVPGGDLAKVQRAVCM+SN+T++AE
Sbjct: 355 INYQPPTVVPGGDLAKVQRAVCMISNSTSVAE 386
Score = 68.1 bits (159), Expect = 6e-12
Identities = 31/37 (83%), Positives = 34/37 (91%)
Frame = -2
Query: 660 PRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 550
PRIHF L +YAPVISAEKA+HEQLSVAEITN+ FEPA
Sbjct: 263 PRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPA 299
Score = 36.7 bits (81), Expect = 0.018
Identities = 20/39 (51%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 787 EXPTYPNLXXXXDXFXLD-HCFLRFDGALNXDLXEFQTN 674
E PTY NL LRFDGALN D+ EFQTN
Sbjct: 220 ERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTN 258
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 99.1 bits (236), Expect = 3e-21
Identities = 44/133 (33%), Positives = 76/133 (57%)
Frame = -3
Query: 542 MVKCDPRHGKYMACCMLYRGDVVPRDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 363
M DPRHG+Y+ ++RG + ++V+ I ++ K + FV+W P K + PPT
Sbjct: 301 MCAADPRHGRYLTASAMFRGKMSTKEVDEQILNVQNKNSSYFVEWIPNNVKSSVCDIPPT 360
Query: 362 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 183
++ A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA
Sbjct: 361 --------GIKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEA 412
Query: 182 REDLAALEKDYEE 144
++ L +Y++
Sbjct: 413 ESNMNDLVSEYQQ 425
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 660 PRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFE 556
PR+HF +V +AP+ S + L+V E+T ++
Sbjct: 262 PRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWD 296
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 97.1 bits (231), Expect = 1e-20
Identities = 44/133 (33%), Positives = 75/133 (56%)
Frame = -3
Query: 542 MVKCDPRHGKYMACCMLYRGDVVPRDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 363
M DPRHG+Y+ ++RG + ++V+ I I+ K + FV+W P K + PP
Sbjct: 301 MCAADPRHGRYLTASAIFRGQMSTKEVDEQILNIQNKNSSYFVEWIPNNVKSSVCDIPPK 360
Query: 362 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 183
++ A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA
Sbjct: 361 --------GLKMAATFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEA 412
Query: 182 REDLAALEKDYEE 144
++ L +Y++
Sbjct: 413 ESNMNDLVAEYQQ 425
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 660 PRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFE 556
PR+HF +V +AP+ S + L+V E+T ++
Sbjct: 262 PRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWD 296
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 96.7 bits (230), Expect = 2e-20
Identities = 43/133 (32%), Positives = 76/133 (57%)
Frame = -3
Query: 542 MVKCDPRHGKYMACCMLYRGDVVPRDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 363
M DPRHG+Y+ ++RG + ++V+ + ++ K + FV+W P K + PPT
Sbjct: 300 MCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT 359
Query: 362 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 183
++ A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA
Sbjct: 360 --------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEA 411
Query: 182 REDLAALEKDYEE 144
++ L +Y++
Sbjct: 412 ESNMNDLVSEYQQ 424
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 660 PRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFE 556
PR+HF +V +AP+ S + L+V E+T ++
Sbjct: 261 PRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWD 295
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 96.7 bits (230), Expect = 2e-20
Identities = 43/133 (32%), Positives = 76/133 (57%)
Frame = -3
Query: 542 MVKCDPRHGKYMACCMLYRGDVVPRDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 363
M DPRHG+Y+ ++RG + ++V+ + ++ K + FV+W P K + PPT
Sbjct: 300 MCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT 359
Query: 362 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 183
++ A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA
Sbjct: 360 --------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEA 411
Query: 182 REDLAALEKDYEE 144
++ L +Y++
Sbjct: 412 ESNMNDLVSEYQQ 424
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 660 PRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFE 556
PR+HF +V +AP+ S + L+V E+T ++
Sbjct: 261 PRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWD 295
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 96.7 bits (230), Expect = 2e-20
Identities = 43/133 (32%), Positives = 76/133 (57%)
Frame = -3
Query: 542 MVKCDPRHGKYMACCMLYRGDVVPRDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 363
M DPRHG+Y+ ++RG + ++V+ + ++ K + FV+W P K + PPT
Sbjct: 300 MCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPT 359
Query: 362 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 183
++ A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA
Sbjct: 360 --------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEA 411
Query: 182 REDLAALEKDYEE 144
++ L +Y++
Sbjct: 412 ESNMNDLVSEYQQ 424
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 660 PRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFE 556
PR+HF +V +AP+ S + L+V E+T ++
Sbjct: 261 PRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWD 295
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 96.7 bits (230), Expect = 2e-20
Identities = 43/133 (32%), Positives = 76/133 (57%)
Frame = -3
Query: 542 MVKCDPRHGKYMACCMLYRGDVVPRDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 363
M DPRHG+Y+ ++RG + ++V+ + ++ K + FV+W P K + PPT
Sbjct: 300 MCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT 359
Query: 362 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 183
++ A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA
Sbjct: 360 --------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEA 411
Query: 182 REDLAALEKDYEE 144
++ L +Y++
Sbjct: 412 ESNMNDLVSEYQQ 424
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 660 PRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFE 556
PR+HF +V +AP+ S + L+V E+T ++
Sbjct: 261 PRLHFFMVGFAPLTSRGSQQYRNLTVPELTQQMWD 295
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 94.3 bits (224), Expect = 9e-20
Identities = 43/133 (32%), Positives = 76/133 (57%)
Frame = -3
Query: 542 MVKCDPRHGKYMACCMLYRGDVVPRDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 363
M DPRHG+Y+ ++RG + ++V+ + I+ K + FV+W P K +
Sbjct: 300 MCAADPRHGRYLTASAVFRGKLSTKEVDEQMMNIQNKNSSYFVEWIPNNVKSSVC----D 355
Query: 362 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 183
+ P G ++ A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA
Sbjct: 356 IAPKG----LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEA 411
Query: 182 REDLAALEKDYEE 144
++ L +Y++
Sbjct: 412 ESNMNDLVAEYQQ 424
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -2
Query: 660 PRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFE 556
PR+HF +V +AP+ S + LSV E+T ++
Sbjct: 261 PRLHFFMVGFAPLTSRGSQQYSALSVPELTQQMWD 295
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 94.3 bits (224), Expect = 9e-20
Identities = 42/133 (31%), Positives = 75/133 (56%)
Frame = -3
Query: 542 MVKCDPRHGKYMACCMLYRGDVVPRDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 363
M DPRHG+Y+ ++RG + ++V+ + ++ K + FV+W P K +
Sbjct: 300 MCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVC----D 355
Query: 362 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 183
+ P G + A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA
Sbjct: 356 IAPRG----LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEA 411
Query: 182 REDLAALEKDYEE 144
++ L +Y++
Sbjct: 412 ESNMNDLVSEYQQ 424
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 660 PRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFE 556
PR+HF +V +AP+ S + L+V E+T ++
Sbjct: 261 PRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWD 295
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 93.9 bits (223), Expect = 1e-19
Identities = 42/133 (31%), Positives = 76/133 (57%)
Frame = -3
Query: 542 MVKCDPRHGKYMACCMLYRGDVVPRDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 363
M DPRHG+Y+ ++RG + ++V+ + ++ K + FV+W P K +
Sbjct: 300 MCAADPRHGRYLTASAVFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSVC----D 355
Query: 362 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 183
+ P G ++ A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA
Sbjct: 356 IAPTG----LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEA 411
Query: 182 REDLAALEKDYEE 144
++ L +Y++
Sbjct: 412 ESNMNDLVAEYQQ 424
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -2
Query: 660 PRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFE 556
PR+HF +V +AP+ S + LSV E+T ++
Sbjct: 261 PRLHFFMVGFAPLTSRGSQQYSALSVPELTQQMWD 295
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 51.6 bits (118), Expect = 6e-07
Identities = 31/127 (24%), Positives = 68/127 (53%), Gaps = 4/127 (3%)
Frame = -3
Query: 515 KYMACCMLYRGDVVPRDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAK 336
KY++ + +G+V P V+ ++ I+ ++ + F+DW P +V ++ + P V ++
Sbjct: 318 KYISILNIIQGEVDPTQVHESLQRIRERKLVNFIDWGPASIQVALSKKSPYVQTSHRVSG 377
Query: 335 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM----EEGEFSEAREDLA 168
+ ML++ T+I ++R ++D + K+AF+ Y M + EF E+R+ +
Sbjct: 378 L-----MLASHTSIRHLFSRCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIE 432
Query: 167 ALEKDYE 147
+L +Y+
Sbjct: 433 SLVDEYK 439
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 48.8 bits (111), Expect = 4e-06
Identities = 29/127 (22%), Positives = 68/127 (53%), Gaps = 4/127 (3%)
Frame = -3
Query: 515 KYMACCMLYRGDVVPRDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAK 336
KY++ + +G+V P V+ ++ I+ ++ + F++W P +V ++ + P V ++
Sbjct: 318 KYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSKKSPYVQTAHRVSG 377
Query: 335 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM----EEGEFSEAREDLA 168
+ ML++ T+I +++ ++D + K+AF+ Y M + EF E+R+ +
Sbjct: 378 L-----MLASHTSIRHLFSKCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIE 432
Query: 167 ALEKDYE 147
+L +Y+
Sbjct: 433 SLVDEYK 439
>At5g33320.1 68418.m03955 triose phosphate/phosphate translocator,
putative similar to SWISS-PROT:P52178 triose
phosphate/phosphate translocator [Cauliflower] {Brassica
oleracea}
Length = 408
Score = 32.7 bits (71), Expect = 0.29
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -1
Query: 277 ALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTW 170
A ++S + +P+V+S S R WR SS P+R W
Sbjct: 31 AASSSDLNVSPNVVSIPSLSRRSWRLASSDSPLRAW 66
>At3g62210.1 68416.m06989 expressed protein contains Pfam profile
PF04396: Protein of unknown function, DUF537; expression
supported by MPSS
Length = 279
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 453 GRVHIPGY-DVTTVQHTASHVLAMTGVAFHHL 545
GRV I Y D + + H H L TG+ HH+
Sbjct: 59 GRVSISAYGDTSGIPHVIQHALNSTGIELHHV 90
>At2g46530.2 68415.m05803 transcriptional factor B3 family protein /
auxin-responsive factor AUX/IAA-related contains Pfam
profiles: PF02309 AUX/IAA family, PF02362 B3 DNA binding
domain
Length = 514
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Frame = -3
Query: 719 IRRRSEXGPXRV-PD*LGALXPVSTSHWSRTRQSF----LPRRPTMNSFPSPRSQTHASS 555
I+R ++ P + P AL P T S++++S + P +SF S SQ+H S+
Sbjct: 251 IQRPNKVSPWEIEPFSPSALTPTPTQQQSKSKRSRPISEITGSPVASSFLSSFSQSHESN 310
Query: 554 PPXQMVKCDP 525
P +++ DP
Sbjct: 311 PSVKLLFQDP 320
>At2g46530.1 68415.m05802 transcriptional factor B3 family protein /
auxin-responsive factor AUX/IAA-related contains Pfam
profiles: PF02309 AUX/IAA family, PF02362 B3 DNA binding
domain
Length = 601
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Frame = -3
Query: 719 IRRRSEXGPXRV-PD*LGALXPVSTSHWSRTRQSF----LPRRPTMNSFPSPRSQTHASS 555
I+R ++ P + P AL P T S++++S + P +SF S SQ+H S+
Sbjct: 338 IQRPNKVSPWEIEPFSPSALTPTPTQQQSKSKRSRPISEITGSPVASSFLSSFSQSHESN 397
Query: 554 PPXQMVKCDP 525
P +++ DP
Sbjct: 398 PSVKLLFQDP 407
>At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to
SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1)
(NR2) {Arabidopsis thaliana}
Length = 917
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 149 RNPSRGQPGPHGLRRTLPPPYPHRRTSARKHAWRT*GRT 265
R +R +PG +G+ R+ PP P R S + H +T +T
Sbjct: 8 RQYARLEPGLNGVVRSYKPPVPGRSDSPKAHQNQTTNQT 46
>At1g29200.1 68414.m03573 hypothetical protein contains Pfam
PF03138: Plant protein family. The function of this
family of plant proteins is unknown;
Length = 698
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 372 LVVDTDLETGWTPVDELDSTLGFDGSDGRVHIPGY 476
LV DT+L TPVD ++ L G VH+ GY
Sbjct: 360 LVTDTELVKEATPVDYIEHVLPLLKKYGMVHLFGY 394
>At1g51660.1 68414.m05820 mitogen-activated protein kinase kinase
(MAPKK), putative (MKK4) identical to MAP kinase kinase
4 [Arabidopsis thaliana] gi|3219271|dbj|BAA28830
gi_13265419
Length = 366
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Frame = +2
Query: 62 ASAP*KIFHWLSTLRLPHPRLQRSPCRLLRNPS--RGQPG----PHGLRRTLPPPYPHRR 223
A+A + H++S P +RS +LL++P R P P L + LPPP P
Sbjct: 301 ATASPEFRHFISCCLQREPGKRRSAMQLLQHPFILRASPSQNRSPQNLHQLLPPPRPLSS 360
Query: 224 TSA 232
+S+
Sbjct: 361 SSS 363
>At3g26855.1 68416.m03360 hypothetical protein
Length = 163
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 256 SCTPSVLSCTGTSVRVWRRESSPK 185
SC P +LS + VR W +SSPK
Sbjct: 114 SCNPMLLSTFPSIVRAWDGKSSPK 137
>At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 587
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -3
Query: 488 RGDVVPRDVNAAIATIKTKRTIQFVDWCPT-GFKVGINYQPPTVVPGGD 345
+G V D A T TK+ + DW P+ FK PP ++P D
Sbjct: 308 QGVAVSSDKGAEANTTSTKKKVSSDDWEPSEPFKASFTI-PPYILPSSD 355
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,307,006
Number of Sequences: 28952
Number of extensions: 357018
Number of successful extensions: 1329
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1320
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -