Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_M23
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    27   2.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.2  
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy...    25   9.7  
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma...    25   9.7  

>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/54 (25%), Positives = 21/54 (38%)
 Frame = +2

Query: 644 IANPRIFSSEVSKPLIILFSSTEQRSSRPSRNKTPQVAPLNRTLNXTNXIVPEI 805
           +  P +   E+ KP ++L   TEQ   R    + P    L         I+P I
Sbjct: 275 VVGPSLIKDELIKPFVLLMKDTEQEVRRAIATQIPGFCELLDKRIVLEEIIPVI 328


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 373 PPAGRAQVEHGAHERQRPAPPEPLERR 453
           PP+ R      A  ++RP PP P  RR
Sbjct: 294 PPSSRVSAAALAANKKRPPPPPPPSRR 320


>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 427

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +1

Query: 160 HFRIHSSLPRVVLK 201
           HF+++SSLPR +LK
Sbjct: 391 HFQLYSSLPRALLK 404


>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 354

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -2

Query: 720 ERCSVEENKIISGLETSEENMRGFAMFLAEXYTQLE--DSQGGRIKTLGESLCK 565
           ++ S E  K    LE+  E  R  A+ +AE   Q E  DS+G +IKT+  +L +
Sbjct: 207 QQVSAERQKRAEILES--EGKRQAAINVAEGDKQAEILDSEGQKIKTINSALAE 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,747,255
Number of Sequences: 5004
Number of extensions: 49940
Number of successful extensions: 150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)