Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_M23
(817 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17025| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_26363| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.48
SB_25587| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 31 1.5
SB_53028| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_53927| Best HMM Match : Adeno_E3_CR1 (HMM E-Value=1.8) 29 6.0
SB_39519| Best HMM Match : Adeno_E3_CR1 (HMM E-Value=1.4) 29 6.0
SB_59196| Best HMM Match : DUF593 (HMM E-Value=1.7) 28 7.9
SB_46910| Best HMM Match : DUF963 (HMM E-Value=3.3) 28 7.9
>SB_17025| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 41.9 bits (94), Expect = 6e-04
Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Frame = -2
Query: 753 T*GVLFREGLLERCSVEENKIISGLETSEE--NMRGFAMFLAEXYT--QLEDSQGGRIK- 589
T G FR L RC E K + L++ + G AMFLAE Y+ +++ + G + +
Sbjct: 135 TEGKQFRSVFLTRCKEEHRKREAMLKSPSTVPRVHGLAMFLAELYSTFRVDGASGSKAQF 194
Query: 588 -TLGESLCKVFLHLLDTDKESNIKAVCQLLKLSGLALD--ADCPTGMHATFERL 436
LG +L ++ L+++ + ++ ++LKL+G LD D + + FE++
Sbjct: 195 GPLGRALLEMLDSLIESGTDDSLLYAGRILKLTGYLLDDPKDNQSRVDGIFEKI 248
>SB_26363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1054
Score = 32.3 bits (70), Expect = 0.48
Identities = 16/66 (24%), Positives = 28/66 (42%)
Frame = +1
Query: 259 QEGALLGGQRVTVRQETALYVIRPAVHAANVLVRGVGEPPAGRAQVEHGAHERQRPAPPE 438
++G LG T + L+ P ++++ V G PPAGR G + Q P+
Sbjct: 8 EKGGGLGVGLATTPCQKILFTETPTAKSSDITVLGEDGPPAGRCMTSGGESQNQEAVRPK 67
Query: 439 PLERRV 456
+ +
Sbjct: 68 TISTTI 73
>SB_25587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 202
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +1
Query: 286 RVTVRQETALYVIRPAVHAANVLVRGV-GEPPAGRAQVEHGAHERQRPAPPEPLERRVHP 462
+V + Q T+ Y +R + +RGV EP RA E H+RQ P E+ V
Sbjct: 134 QVVIVQTTSFYALRTTPEPFPMEIRGVPSEPKLHRAFHERSRHKRQFQFPERQPEKFVDS 193
Query: 463 RRAVRV 480
V V
Sbjct: 194 NNFVSV 199
>SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 1354
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = +1
Query: 325 RPAVHAANVLVRGVGEPPAGRAQVEHGAHERQRPAPPEPLERRVHPRRAVRVEGQTRQLE 504
RPA V +G E +A+ + A + RPAPP P R P AV+ +G+ Q+
Sbjct: 1177 RPAPPRPTVPSQGRSEGDKIQAEGDKDAVKPSRPAPPAP---RRPPPPAVKQDGEKEQVM 1233
Query: 505 QLT 513
+T
Sbjct: 1234 NMT 1236
>SB_53028| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 644 IANPRIFSSEVSKPLIILFSSTEQRSS 724
+ N +I+SSE++ P + SSTEQ SS
Sbjct: 60 VPNSKIYSSELAPPTSVKLSSTEQLSS 86
>SB_53927| Best HMM Match : Adeno_E3_CR1 (HMM E-Value=1.8)
Length = 582
Score = 28.7 bits (61), Expect = 6.0
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 14/122 (11%)
Frame = -2
Query: 738 FREGLLERCSVEENKIISGLETSEENMRGFAMFLAEXYTQLEDSQGGR-IKTLGESLCKV 562
F +GL R EE + G + + GF +++ L D + + T+G C V
Sbjct: 222 FEDGL--RFFAEECDRLQGFQILADVHNGFGGLMSQCLEDLRDEYNSKSMITVG---C-V 275
Query: 561 FLHLLDTDKESNIKAVCQL-LKLSGLALDAD-----CPT-------GMHATFERLRRRGS 421
H DTD+E N+K + + L S + D C + G + TF L +G
Sbjct: 276 PAHFKDTDQEHNVKRILNMALSFSQITEHCDLFVPLCVSKQVWPKPGTYVTFPYLNYKGE 335
Query: 420 LP 415
LP
Sbjct: 336 LP 337
>SB_39519| Best HMM Match : Adeno_E3_CR1 (HMM E-Value=1.4)
Length = 582
Score = 28.7 bits (61), Expect = 6.0
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 14/122 (11%)
Frame = -2
Query: 738 FREGLLERCSVEENKIISGLETSEENMRGFAMFLAEXYTQLEDSQGGR-IKTLGESLCKV 562
F +GL R EE + G + + GF +++ L D + + T+G C V
Sbjct: 222 FEDGL--RFFAEECDRLQGFQILADVHNGFGGLMSQCLEDLRDEYNSKSMITVG---C-V 275
Query: 561 FLHLLDTDKESNIKAVCQL-LKLSGLALDAD-----CPT-------GMHATFERLRRRGS 421
H DTD+E N+K + + L S + D C + G + TF L +G
Sbjct: 276 PAHFKDTDQEHNVKRILNMALSFSQITEHCDLFVPLCVSKQVWPKPGTYVTFPYLNYKGE 335
Query: 420 LP 415
LP
Sbjct: 336 LP 337
>SB_59196| Best HMM Match : DUF593 (HMM E-Value=1.7)
Length = 1376
Score = 28.3 bits (60), Expect = 7.9
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = -2
Query: 708 VEENKII--SGLETSEENMRGFAMFLAEXYTQLEDSQGGRIKTLGESLCKVFLHLLDTDK 535
VEE++I+ S LE EE++R + E +E+S+ + E V + L+ +
Sbjct: 616 VEESEILEESALEIQEESLRLEESAIVEESAIVEESE------IVEESEIVEVSTLEIQE 669
Query: 534 ESNIKAVCQLLKLSGLALDADC 469
ES+ C++++ S L + DC
Sbjct: 670 ESHDVGECEVVEESNLEIQEDC 691
>SB_46910| Best HMM Match : DUF963 (HMM E-Value=3.3)
Length = 984
Score = 28.3 bits (60), Expect = 7.9
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = -2
Query: 708 VEENKII--SGLETSEENMRGFAMFLAEXYTQLEDSQGGRIKTLGESLCKVFLHLLDTDK 535
VEE++I+ S LE EE++R + E +E+S+ + E V + L+ +
Sbjct: 616 VEESEILEESALEIQEESLRLEESAIVEESAIVEESE------IVEESEIVEVSTLEIQE 669
Query: 534 ESNIKAVCQLLKLSGLALDADC 469
ES+ C++++ S L + DC
Sbjct: 670 ESHDVGECEVVEESNLEIQEDC 691
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,574,203
Number of Sequences: 59808
Number of extensions: 407960
Number of successful extensions: 1273
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1271
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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