Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_M23
         (817 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g07650.1 68414.m00821 leucine-rich repeat transmembrane prote...    32   0.52 
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ...    31   1.2  
At5g20300.1 68418.m02416 chloroplast outer membrane protein, put...    29   2.8  
At5g10300.1 68418.m01195 hydrolase, alpha/beta fold family prote...    29   3.7  
At2g02580.1 68415.m00198 cytochrome P450 family protein                29   4.9  
At5g44220.1 68418.m05410 F-box family protein similar to unknown...    28   6.4  
At1g29730.1 68414.m03634 leucine-rich repeat transmembrane prote...    28   8.5  

>At1g07650.1 68414.m00821 leucine-rich repeat transmembrane protein
           kinase, putative similar to GB:AAC50043 from
           [Arabidopsis thaliana] (Plant Mol. Biol. 37 (4), 587-596
           (1998))
          Length = 1014

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = -2

Query: 714 CSVEENKIISGLETSEENMRGFAMFLAEXYTQLEDSQGGRIKT-LGESLCKVFLHLLDTD 538
           C VE N++I   E  E N    A+F  +  ++L+     R K  LG +    FLH     
Sbjct: 740 CCVEGNQLILVYEYLENNCLSRALFGKDESSRLKLDWSTRKKIFLGIAKGLTFLH----- 794

Query: 537 KESNIKAVCQLLKLSGLALDAD 472
           +ES IK V + +K S + LD D
Sbjct: 795 EESRIKIVHRDIKASNVLLDKD 816


>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 1003

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
 Frame = +1

Query: 238 VRRQVALQEGALLGGQRVTVRQETALYVIRPAVHAANV-LVRGVGEPPAGRAQVEHGA-- 408
           V R + L+ G+ +GG+R+TV+Q       RP++         G+  P   + Q +     
Sbjct: 74  VNRAIELKNGSTVGGRRITVKQAAH----RPSLQERRTKAAEGISVPDNSQGQSDKDTSI 129

Query: 409 -HERQRPAPPEPLERRVHPRRAVRVEGQTRQLEQ 507
               ++ +PPE    +   R+ V    + +Q+E+
Sbjct: 130 PETDEKVSPPEKKLEKPVERKKVEKPIERKQVEK 163


>At5g20300.1 68418.m02416 chloroplast outer membrane protein,
           putative similar to chloroplast protein import component
           Toc159 [Pisum sativum] GI:8489806, chloroplast outer
           envelope protein 86 [Pisum sativum] GI:599958,
           GTP-binding protein [Pisum sativum] GI:576509
          Length = 793

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 108 VIALSDSI--S*ETRGSSPAFQDPFQSPTSRSQAP 206
           V ALS+S+  S    GS P F+DP Q   + SQAP
Sbjct: 8   VFALSNSMASSRPLLGSDPFFRDPHQEQDNHSQAP 42


>At5g10300.1 68418.m01195 hydrolase, alpha/beta fold family protein
           similar to ethylene-induced esterase [Citrus sinensis]
           GI:14279437, alpha-hydroxynitrile lyase [Manihot
           esculenta] GI:2780225; contains Pfam profile PF00561:
           hydrolase, alpha/beta fold family
          Length = 258

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 537 YQ-CPIDAEKLCRDFHRESLFFLLDYPQAEYXSRQG 641
           YQ CPI+  +L +  HR+  FF  D  + E  S +G
Sbjct: 159 YQNCPIEDYELAKMLHRQGSFFTEDLSKKEKFSEEG 194


>At2g02580.1 68415.m00198 cytochrome P450 family protein 
          Length = 500

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = -3

Query: 680 WKLQRRICVDLLCSLPRXILSLRIVKEEE*R 588
           WK  RRICV  L S  R + S++ +KEEE R
Sbjct: 123 WKELRRICVQELFSAKR-VHSIQPIKEEEVR 152


>At5g44220.1 68418.m05410 F-box family protein similar to unknown
           protein (pir||T06086)
          Length = 295

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = -3

Query: 626 ILSLRIVKEEE*RLSVKVSAKFFCI--YW-TLIRSQ-TSKLFVNCSSCR 492
           +L + ++KE   RL  K  A+F C+   W ++IRS+   KLF+  SS R
Sbjct: 61  LLPMDLIKEILKRLPAKTLARFLCVSKLWSSIIRSRDLMKLFLTESSAR 109


>At1g29730.1 68414.m03634 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam domains, PF00560: Leucine
           Rich Repeat and PF00069: Protein kinase domain
          Length = 940

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 23/81 (28%), Positives = 39/81 (48%)
 Frame = -2

Query: 714 CSVEENKIISGLETSEENMRGFAMFLAEXYTQLEDSQGGRIKTLGESLCKVFLHLLDTDK 535
           C VE+N+++   E  E N    A+F      +LE     +I  LG +    FLH     +
Sbjct: 673 CCVEKNQLLLVYEYLENNCLSDALFAGRSCLKLEWGTRHKI-CLGIARGLAFLH-----E 726

Query: 534 ESNIKAVCQLLKLSGLALDAD 472
           +S +K + + +K + + LD D
Sbjct: 727 DSAVKIIHRDIKGTNVLLDKD 747


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,014,306
Number of Sequences: 28952
Number of extensions: 292610
Number of successful extensions: 948
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)