Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_M18
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    28   1.9  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    27   2.5  
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po...    27   3.3  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   3.3  
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi...    27   4.3  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   5.7  
SPAPB8E5.04c |||phosphatidylglycerol/phosphatidylinositol transf...    26   5.7  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   7.5  

>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 388 ERQCLCTQRM-LFISAFPWTDITHINSEVIFHCFSHYIHP 504
           E + +C   + +F   FP   +  +N +V+ HC SH   P
Sbjct: 594 EHRAMCAFILSVFCRGFPQGQLACLNPQVLSHCLSHLNSP 633


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 342 SVNMMVNECNITIARGTTMSLYPKNAFHICFPLDRYNTH 458
           +V +  N  N++    TT+S+   +   IC P+D+ NTH
Sbjct: 543 TVKLEDNTVNLSFVNETTVSV---DKVVICIPMDKLNTH 578


>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 476 FIVFHITFILHTNTHADLSWKSFESQQHAYN 568
           F V ++  I+HT  H    W+S+E  +   N
Sbjct: 14  FYVLYLEKIIHTRPHKKCDWRSWEQWESTGN 44


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 462  LRSHISLFFTLHSSFTQIHTQIFHGKVLN 548
            L + + LF T+ S F  I  + FHG +LN
Sbjct: 2761 LGNPVGLFTTITSGFADIFYEPFHGFILN 2789


>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
           Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +2

Query: 119 QLM*LIYHPQVE---VYQYTTYDNTSDFYKNV 205
           Q+M ++ HP +     Y YTT DN+ + Y N+
Sbjct: 75  QIMRIMKHPNIVDLIAYYYTTGDNSDEVYLNL 106


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +1

Query: 424 ISAFPWTDITHINSEV-IFHCFSHYIHPSHKYT-RRSFMEKF 543
           IS   +TD   INS +  F CF H + PS K T   +F+E F
Sbjct: 780 ISRCSFTDF-EINSILNFFFCFLHTVEPSGKLTFELAFLEIF 820


>SPAPB8E5.04c |||phosphatidylglycerol/phosphatidylinositol transfer
           protein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
 Frame = +3

Query: 96  ILIINGHLNLCN*FITHKSRFISTQHMTTLAIFIKMFIISLPKGLKC--YHTFVPRYTES 269
           + I+N  L++C+          + +      I  K   ISLP  +    YH     Y   
Sbjct: 108 VRIVNERLDICD----KAYELAAVECPVEPGIITKQATISLPWAIPPGRYHVLATAYNAD 163

Query: 270 NER*NCVYASVLF 308
            E+  CV ASV F
Sbjct: 164 GEQLTCVSASVSF 176


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +1

Query: 10   FFLYKYNLVYY 42
            FFLY+YN VYY
Sbjct: 1052 FFLYRYNQVYY 1062


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,033,874
Number of Sequences: 5004
Number of extensions: 60696
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)