BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_T7_M18 (832 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 28 1.9 SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 27 2.5 SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po... 27 3.3 SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 27 3.3 SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi... 27 4.3 SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 5.7 SPAPB8E5.04c |||phosphatidylglycerol/phosphatidylinositol transf... 26 5.7 SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 26 7.5 >SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1313 Score = 27.9 bits (59), Expect = 1.9 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Frame = +1 Query: 388 ERQCLCTQRM-LFISAFPWTDITHINSEVIFHCFSHYIHP 504 E + +C + +F FP + +N +V+ HC SH P Sbjct: 594 EHRAMCAFILSVFCRGFPQGQLACLNPQVLSHCLSHLNSP 633 >SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1000 Score = 27.5 bits (58), Expect = 2.5 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = +3 Query: 342 SVNMMVNECNITIARGTTMSLYPKNAFHICFPLDRYNTH 458 +V + N N++ TT+S+ + IC P+D+ NTH Sbjct: 543 TVKLEDNTVNLSFVNETTVSV---DKVVICIPMDKLNTH 578 >SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces pombe|chr 1|||Manual Length = 422 Score = 27.1 bits (57), Expect = 3.3 Identities = 10/31 (32%), Positives = 16/31 (51%) Frame = +2 Query: 476 FIVFHITFILHTNTHADLSWKSFESQQHAYN 568 F V ++ I+HT H W+S+E + N Sbjct: 14 FYVLYLEKIIHTRPHKKCDWRSWEQWESTGN 44 >SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 3071 Score = 27.1 bits (57), Expect = 3.3 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +3 Query: 462 LRSHISLFFTLHSSFTQIHTQIFHGKVLN 548 L + + LF T+ S F I + FHG +LN Sbjct: 2761 LGNPVGLFTTITSGFADIFYEPFHGFILN 2789 >SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schizosaccharomyces pombe|chr 1|||Manual Length = 387 Score = 26.6 bits (56), Expect = 4.3 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%) Frame = +2 Query: 119 QLM*LIYHPQVE---VYQYTTYDNTSDFYKNV 205 Q+M ++ HP + Y YTT DN+ + Y N+ Sbjct: 75 QIMRIMKHPNIVDLIAYYYTTGDNSDEVYLNL 106 >SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual Length = 1828 Score = 26.2 bits (55), Expect = 5.7 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%) Frame = +1 Query: 424 ISAFPWTDITHINSEV-IFHCFSHYIHPSHKYT-RRSFMEKF 543 IS +TD INS + F CF H + PS K T +F+E F Sbjct: 780 ISRCSFTDF-EINSILNFFFCFLHTVEPSGKLTFELAFLEIF 820 >SPAPB8E5.04c |||phosphatidylglycerol/phosphatidylinositol transfer protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 188 Score = 26.2 bits (55), Expect = 5.7 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 2/73 (2%) Frame = +3 Query: 96 ILIINGHLNLCN*FITHKSRFISTQHMTTLAIFIKMFIISLPKGLKC--YHTFVPRYTES 269 + I+N L++C+ + + I K ISLP + YH Y Sbjct: 108 VRIVNERLDICD----KAYELAAVECPVEPGIITKQATISLPWAIPPGRYHVLATAYNAD 163 Query: 270 NER*NCVYASVLF 308 E+ CV ASV F Sbjct: 164 GEQLTCVSASVSF 176 >SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc2|Schizosaccharomyces pombe|chr 1|||Manual Length = 1463 Score = 25.8 bits (54), Expect = 7.5 Identities = 9/11 (81%), Positives = 10/11 (90%) Frame = +1 Query: 10 FFLYKYNLVYY 42 FFLY+YN VYY Sbjct: 1052 FFLYRYNQVYY 1062 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,033,874 Number of Sequences: 5004 Number of extensions: 60696 Number of successful extensions: 147 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 139 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 147 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 408446760 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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