Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_M18
         (832 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13856| Best HMM Match : CXC (HMM E-Value=0.021)                     30   2.6  

>SB_13856| Best HMM Match : CXC (HMM E-Value=0.021)
          Length = 464

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
 Frame = +3

Query: 216 LPKGLKCYHTFV---PRYTESNER*NCVYASVLFCKSSKVILD-LLSVNMMVNECNITIA 383
           LPK L CY T+V   P    S+++ + VY   +  + S + +  LL+ +  V +  IT+ 
Sbjct: 35  LPKQLHCYFTWVIHGPMDFASDKKLSEVYKRAVILRQSTISMTALLTASFSVEDLPITVM 94

Query: 384 RGTTMSLYPKNAFHICFPLDRYN 452
                 L  +N  H  FP++  N
Sbjct: 95  LKDFAWLLVRNLTH--FPVEDAN 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,045,732
Number of Sequences: 59808
Number of extensions: 435092
Number of successful extensions: 920
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)