Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_M18
         (832 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039053-5|AAC25875.2|  293|Caenorhabditis elegans Serpentine re...    31   1.3  
Z92970-1|CAB07480.1|  488|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AB072567-1|BAB88817.1|  488|Caenorhabditis elegans ceERp57 protein.    29   4.1  
AL110498-3|CAB54470.1|  846|Caenorhabditis elegans Hypothetical ...    28   9.4  

>AF039053-5|AAC25875.2|  293|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 23 protein.
          Length = 293

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/68 (23%), Positives = 30/68 (44%)
 Frame = +2

Query: 371 HYYCKRNDNVSVPKECFSYLLSLGQI*HT*TQKSYFIVFHITFILHTNTHADLSWKSFES 550
           +Y+C  N  ++ P+ C +   S+         KS  ++F +TF       + L WK F+ 
Sbjct: 146 YYFC--NFELTFPRNCLTIGCSINACSSRFWTKSKLVIFVLTFSFAALLSSKLLWKVFKK 203

Query: 551 QQHAYNSS 574
               +N +
Sbjct: 204 DNKDFNKA 211


>Z92970-1|CAB07480.1|  488|Caenorhabditis elegans Hypothetical
           protein H06O01.1 protein.
          Length = 488

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 658 RDFIKYVSEXATSELKGWDRKGNAKXR 578
           +DF+ ++S+ +T  LKG+ R G  K +
Sbjct: 459 KDFVSFISKHSTDGLKGFSRDGKKKKK 485


>AB072567-1|BAB88817.1|  488|Caenorhabditis elegans ceERp57 protein.
          Length = 488

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 658 RDFIKYVSEXATSELKGWDRKGNAKXR 578
           +DF+ ++S+ +T  LKG+ R G  K +
Sbjct: 459 KDFVSFISKHSTDGLKGFSRDGKKKKK 485


>AL110498-3|CAB54470.1|  846|Caenorhabditis elegans Hypothetical
           protein Y64G10A.6 protein.
          Length = 846

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 165 TQHMTTLAIFIKMFIISLPKGLKCYHTFVPRYTESN 272
           T  +T  AI   +FI+S+  GLKCY  F  +   SN
Sbjct: 418 TYAITGGAIIAILFILSVCAGLKCYKKFNNKKKASN 453


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,661,015
Number of Sequences: 27780
Number of extensions: 338480
Number of successful extensions: 907
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)