Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_M16
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    29   1.1  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    28   1.4  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    27   2.5  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    27   4.4  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    26   7.6  

>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -3

Query: 161  FVKKTNKTLTIALKLIFDMGIINSSKTSI 75
            F+ +T+KTL +ALK  FDM   N+S + +
Sbjct: 1070 FMSETSKTLNMALKSEFDMTDFNNSGSKL 1098


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +3

Query: 414 ETFSLADSSSGAKRIFNTHFLDSESERPDSLSETLNAFLTENCNYHYSNVSL 569
           E+ S + SSS  KR+F  H    ES   +S+ +   A  +     +YSNVS+
Sbjct: 221 ESVSFSSSSSVIKRMFKEH----ESVLRNSMDDFHTAISSSEIELNYSNVSV 268


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = +3

Query: 411 PETFSLADSSSGAKRIFNTHFLDSESERPDSLSETLNAFLTENCNYHYSNVSLLLDI 581
           P   ++A+ SS  +R  +T   D   E P SLS+T ++       YH  N S+  DI
Sbjct: 588 PIANAMAELSSSMRRRQSTSVDD---EAPVSLSKTSSSTRLNGLGYHSRNTSIASDI 641


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 102  PHIKNKFKGDCERFVSFFYEIS 167
            P ++ KF+G  E  V+FFY ++
Sbjct: 1212 PELRKKFEGQPEHVVNFFYYVA 1233


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 538 TATTIIQMSLCYWISFNAISARLFFFE 618
           T  T++  S+CYW+  N   A LF  E
Sbjct: 479 TTNTVLAKSICYWL--NDAMALLFLLE 503


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,929,359
Number of Sequences: 5004
Number of extensions: 58123
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)