Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_M16
         (841 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0335 - 16903775-16904118,16904203-16904325,16904424-16905993     31   1.5  
06_03_0793 + 24662506-24663512,24664470-24664787,24664996-246653...    29   6.1  
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408...    29   6.1  
03_05_0884 - 28487013-28487271,28487355-28487516,28487594-284878...    29   6.1  

>07_03_0335 - 16903775-16904118,16904203-16904325,16904424-16905993
          Length = 678

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 480 SESERPDSLSETLNAFLTENCNYHYSNVSLLLD 578
           S SE+P S+  T++A L +  N H S+V + +D
Sbjct: 545 SRSEKPASIGSTIDAVLLQEGNTHTSDVEMSMD 577


>06_03_0793 +
           24662506-24663512,24664470-24664787,24664996-24665323,
           24665465-24665887,24665960-24666252,24666332-24666605,
           24666856-24667358,24667464-24667785,24667875-24668220,
           24668339-24668997,24669524-24669625,24669656-24670052,
           24670155-24670270,24670360-24670386
          Length = 1704

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 105 HIKNKFKGDCERFVSFFYEISSPT 176
           HI+ KFK  C +  S FY +S  T
Sbjct: 777 HIQEKFKAKCRKSESVFYTVSDAT 800


>05_01_0490 +
           4083768-4083775,4083845-4084336,4084441-4084522,
           4086671-4087357,4087555-4087813,4088435-4088558,
           4089474-4089564
          Length = 580

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 435 SSSGAKRIFNTHFLDSESERPDSLSETLNAFLTENCNY 548
           S  G   +F+    D+E +     S T  A + +NCNY
Sbjct: 449 SDKGTVHVFSLRVKDAEEDAKKGESATAGAQVNDNCNY 486


>03_05_0884 - 28487013-28487271,28487355-28487516,28487594-28487802,
            28488490-28488630,28488876-28489071,28489207-28489379,
            28490095-28490142,28490301-28490378,28490526-28490792,
            28491689-28491842,28491928-28492064,28492459-28492536,
            28493039-28493216,28493589-28493803,28494063-28494422,
            28494497-28494973,28495561-28495665,28495838-28496020,
            28496105-28496263,28496937-28497154,28497737-28497905,
            28498262-28498568,28498699-28498826,28498902-28499060,
            28499194-28499364,28500258-28500376,28500604-28500853,
            28501007-28501759
          Length = 1950

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -2

Query: 597  RDCVKRYPVTERHLNNGSCSFQLKMHSG---FRRANPVSQIRCR 475
            R CVK Y    RH+N    +  L + SG   F R  P++ +R R
Sbjct: 1865 RLCVKGYLAGRRHMNGIITTVNLMVDSGLPCFSRGEPIANLRKR 1908


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,223,609
Number of Sequences: 37544
Number of extensions: 315382
Number of successful extensions: 533
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)