BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_T7_M15 (783 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 352 1e-97 At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 352 1e-97 At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 352 1e-97 At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 351 4e-97 At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 351 4e-97 At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 338 2e-93 At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 251 5e-67 At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 133 1e-31 At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 132 3e-31 At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 132 3e-31 At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 132 3e-31 At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 131 4e-31 At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 131 6e-31 At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 130 1e-30 At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 130 1e-30 At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 129 2e-30 At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 66 3e-11 At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 63 2e-10 At5g33320.1 68418.m03955 triose phosphate/phosphate translocator... 33 0.28 At3g62210.1 68416.m06989 expressed protein contains Pfam profile... 33 0.28 At2g40070.1 68415.m04923 expressed protein 33 0.28 At1g29200.1 68414.m03573 hypothetical protein contains Pfam PF03... 30 1.5 At1g62870.1 68414.m07099 expressed protein 29 2.6 At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to ... 29 4.6 At3g11690.1 68416.m01433 expressed protein 28 6.1 At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein ... 28 6.1 At1g68080.1 68414.m07777 expressed protein 28 6.1 At1g51660.1 68414.m05820 mitogen-activated protein kinase kinase... 28 6.1 At3g26855.1 68416.m03360 hypothetical protein 28 8.0 >At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly identical to SP|P29511 Tubulin alpha-6 chain {Arabidopsis thaliana} Length = 450 Score = 352 bits (866), Expect = 1e-97 Identities = 156/180 (86%), Positives = 171/180 (95%) Frame = -2 Query: 674 LVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCML 495 LVPYPRIHF L +YAPVISAEKA+HEQLSVAEITN+ FEPA+ M KCDPRHGKYMACC++ Sbjct: 259 LVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLM 318 Query: 494 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 315 YRGDVVPKDVNAA+ TIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+ Sbjct: 319 YRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMI 378 Query: 314 SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 135 SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG + Sbjct: 379 SNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438 Score = 37.9 bits (84), Expect = 0.008 Identities = 23/44 (52%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Frame = -1 Query: 780 PTYTNXXVSXTD-FSSITASLRFDGALNVTSPSSRLTCALPPYP 652 PTYTN + SS+TASLRFDGALNV + L PYP Sbjct: 222 PTYTNLNRLVSQVISSLTASLRFDGALNV--DVTEFQTNLVPYP 263 >At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) identical to tubulin alpha-2/alpha-4 chain SP|P29510 GB:P29510 from [Arabidopsis thaliana] Length = 450 Score = 352 bits (866), Expect = 1e-97 Identities = 156/180 (86%), Positives = 171/180 (95%) Frame = -2 Query: 674 LVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCML 495 LVPYPRIHF L +YAPVISAEKA+HEQLSVAEITN+ FEPA+ M KCDPRHGKYMACC++ Sbjct: 259 LVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLM 318 Query: 494 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 315 YRGDVVPKDVNAA+ TIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+ Sbjct: 319 YRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMI 378 Query: 314 SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 135 SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG + Sbjct: 379 SNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438 Score = 37.9 bits (84), Expect = 0.008 Identities = 23/44 (52%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Frame = -1 Query: 780 PTYTNXXVSXTD-FSSITASLRFDGALNVTSPSSRLTCALPPYP 652 PTYTN + SS+TASLRFDGALNV + L PYP Sbjct: 222 PTYTNLNRLVSQVISSLTASLRFDGALNV--DVTEFQTNLVPYP 263 >At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) nearly identical to SP:P29510 Tubulin alpha-2/alpha-4 chain from [Arabidopsis thaliana] Length = 450 Score = 352 bits (866), Expect = 1e-97 Identities = 156/180 (86%), Positives = 171/180 (95%) Frame = -2 Query: 674 LVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCML 495 LVPYPRIHF L +YAPVISAEKA+HEQLSVAEITN+ FEPA+ M KCDPRHGKYMACC++ Sbjct: 259 LVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLM 318 Query: 494 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 315 YRGDVVPKDVNAA+ TIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+ Sbjct: 319 YRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMI 378 Query: 314 SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 135 SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG + Sbjct: 379 SNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438 Score = 37.9 bits (84), Expect = 0.008 Identities = 23/44 (52%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Frame = -1 Query: 780 PTYTNXXVSXTD-FSSITASLRFDGALNVTSPSSRLTCALPPYP 652 PTYTN + SS+TASLRFDGALNV + L PYP Sbjct: 222 PTYTNLNRLVSQVISSLTASLRFDGALNV--DVTEFQTNLVPYP 263 >At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) nearly identical to SP|P20363 Tubulin alpha-3/alpha-5 chain {Arabidopsis thaliana} Length = 450 Score = 351 bits (862), Expect = 4e-97 Identities = 156/180 (86%), Positives = 168/180 (93%) Frame = -2 Query: 674 LVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCML 495 LVPYPRIHF L +YAPVISA KAYHEQLSV EITNA FEPA+ M KCDPRHGKYMACC++ Sbjct: 259 LVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLM 318 Query: 494 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 315 YRGDVVPKDVNAA+ TIKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+ Sbjct: 319 YRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMI 378 Query: 314 SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 135 SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG + Sbjct: 379 SNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438 Score = 35.5 bits (78), Expect = 0.040 Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = -1 Query: 780 PTYTNXXVSXTDF-SSITASLRFDGALNVTSPSSRLTCALPPYP 652 PTYTN + SS+T SLRFDGA+NV + L PYP Sbjct: 222 PTYTNLNRLISQIISSLTTSLRFDGAINV--DITEFQTNLVPYP 263 >At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) nearly identical to SP|P20363 Tubulin alpha-3/alpha-5 chain {Arabidopsis thaliana} Length = 450 Score = 351 bits (862), Expect = 4e-97 Identities = 156/180 (86%), Positives = 168/180 (93%) Frame = -2 Query: 674 LVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCML 495 LVPYPRIHF L +YAPVISA KAYHEQLSV EITNA FEPA+ M KCDPRHGKYMACC++ Sbjct: 259 LVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLM 318 Query: 494 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 315 YRGDVVPKDVNAA+ TIKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+ Sbjct: 319 YRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMI 378 Query: 314 SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 135 SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG + Sbjct: 379 SNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438 Score = 35.5 bits (78), Expect = 0.040 Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = -1 Query: 780 PTYTNXXVSXTDF-SSITASLRFDGALNVTSPSSRLTCALPPYP 652 PTYTN + SS+T SLRFDGA+NV + L PYP Sbjct: 222 PTYTNLNRLISQIISSLTTSLRFDGAINV--DITEFQTNLVPYP 263 >At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly identical to SP|P11139 Tubulin alpha-1 chain {Arabidopsis thaliana} Length = 450 Score = 338 bits (831), Expect = 2e-93 Identities = 149/178 (83%), Positives = 163/178 (91%) Frame = -2 Query: 674 LVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCML 495 LVPYPRIHF L +YAPVIS+ KAYHEQ SV EIT + FEP+N M KCDPRHGKYMACC++ Sbjct: 259 LVPYPRIHFMLSSYAPVISSAKAYHEQFSVPEITTSVFEPSNMMAKCDPRHGKYMACCLM 318 Query: 494 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 315 YRGDVVPKDVN A+A IK KRTIQFVDWCPTGFK GINYQPP+VVPGGDLAKVQRAVCM+ Sbjct: 319 YRGDVVPKDVNTAVAAIKAKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMI 378 Query: 314 SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG 141 SN TA+AE ++R+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG Sbjct: 379 SNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG 436 Score = 35.1 bits (77), Expect = 0.053 Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 2/45 (4%) Frame = -1 Query: 780 PTYTNXX--VSXTDFSSITASLRFDGALNVTSPSSRLTCALPPYP 652 PTY+N +S T SS+T SLRFDGA+NV + L PYP Sbjct: 222 PTYSNLNRLISQT-ISSLTTSLRFDGAINV--DITEFQTNLVPYP 263 >At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly identical to SP|P29511 Tubulin alpha-6 chain {Arabidopsis thaliana} Length = 427 Score = 251 bits (614), Expect = 5e-67 Identities = 110/128 (85%), Positives = 121/128 (94%) Frame = -2 Query: 674 LVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCML 495 LVPYPRIHF L +YAPVISAEKA+HEQLSVAEITN+ FEPA+ M KCDPRHGKYMACC++ Sbjct: 259 LVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLM 318 Query: 494 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 315 YRGDVVPKDVNAA+ TIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+ Sbjct: 319 YRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMI 378 Query: 314 SNTTAIAE 291 SN+T++AE Sbjct: 379 SNSTSVAE 386 Score = 37.9 bits (84), Expect = 0.008 Identities = 23/44 (52%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Frame = -1 Query: 780 PTYTNXXVSXTD-FSSITASLRFDGALNVTSPSSRLTCALPPYP 652 PTYTN + SS+TASLRFDGALNV + L PYP Sbjct: 222 PTYTNLNRLVSQVISSLTASLRFDGALNV--DVTEFQTNLVPYP 263 >At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis thaliana} Length = 447 Score = 133 bits (321), Expect = 1e-31 Identities = 60/176 (34%), Positives = 102/176 (57%) Frame = -2 Query: 674 LVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCML 495 L+P+PR+HF +V +AP+ S + L+V E+T ++ N M DPRHG+Y+ + Sbjct: 258 LIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAM 317 Query: 494 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 315 +RG + K+V+ I ++ K + FV+W P K + PPT ++ A + Sbjct: 318 FRGKMSTKEVDEQILNVQNKNSSYFVEWIPNNVKSSVCDIPPT--------GIKMASTFV 369 Query: 314 SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 147 N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ Sbjct: 370 GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 425 >At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly identical to SP|P29512 Tubulin beta-2/beta-3 chain {Arabidopsis thaliana} Length = 450 Score = 132 bits (318), Expect = 3e-31 Identities = 59/176 (33%), Positives = 102/176 (57%) Frame = -2 Query: 674 LVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCML 495 L+P+PR+HF +V +AP+ S + L+V E+T ++ N M DPRHG+Y+ + Sbjct: 257 LIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAM 316 Query: 494 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 315 +RG + K+V+ + ++ K + FV+W P K + PPT ++ A + Sbjct: 317 FRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFI 368 Query: 314 SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 147 N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ Sbjct: 369 GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424 >At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly identical to SP|P29512 Tubulin beta-2/beta-3 chain {Arabidopsis thaliana} Length = 450 Score = 132 bits (318), Expect = 3e-31 Identities = 59/176 (33%), Positives = 102/176 (57%) Frame = -2 Query: 674 LVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCML 495 L+P+PR+HF +V +AP+ S + L+V E+T ++ N M DPRHG+Y+ + Sbjct: 257 LIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAM 316 Query: 494 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 315 +RG + K+V+ + ++ K + FV+W P K + PPT ++ A + Sbjct: 317 FRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFI 368 Query: 314 SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 147 N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ Sbjct: 369 GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424 >At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis thaliana} Length = 449 Score = 132 bits (318), Expect = 3e-31 Identities = 59/176 (33%), Positives = 102/176 (57%) Frame = -2 Query: 674 LVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCML 495 L+P+PR+HF +V +AP+ S + L+V E+T ++ N M DPRHG+Y+ + Sbjct: 257 LIPFPRLHFFMVGFAPLTSRGSQQYRNLTVPELTQQMWDAKNMMCAADPRHGRYLTASAM 316 Query: 494 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 315 +RG + K+V+ + ++ K + FV+W P K + PPT ++ A + Sbjct: 317 FRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFI 368 Query: 314 SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 147 N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ Sbjct: 369 GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424 >At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis thaliana}; supporting cDNA gi|15451225|gb|AY054693.1| Length = 449 Score = 131 bits (317), Expect = 4e-31 Identities = 59/176 (33%), Positives = 102/176 (57%) Frame = -2 Query: 674 LVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCML 495 L+P+PR+HF +V +AP+ S + L+V E+T ++ N M DPRHG+Y+ + Sbjct: 257 LIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAM 316 Query: 494 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 315 +RG + K+V+ + ++ K + FV+W P K + PPT ++ A + Sbjct: 317 FRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFI 368 Query: 314 SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 147 N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ Sbjct: 369 GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424 >At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis thaliana} Length = 449 Score = 131 bits (316), Expect = 6e-31 Identities = 60/176 (34%), Positives = 101/176 (57%) Frame = -2 Query: 674 LVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCML 495 L+P+PR+HF +V +AP+ S + L+V E+T ++ N M DPRHG+Y+ + Sbjct: 258 LIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDSKNMMCAADPRHGRYLTASAI 317 Query: 494 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 315 +RG + K+V+ I I+ K + FV+W P K + PP ++ A + Sbjct: 318 FRGQMSTKEVDEQILNIQNKNSSYFVEWIPNNVKSSVCDIPP--------KGLKMAATFV 369 Query: 314 SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 147 N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ Sbjct: 370 GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 425 >At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis thaliana} Length = 444 Score = 130 bits (314), Expect = 1e-30 Identities = 60/176 (34%), Positives = 102/176 (57%) Frame = -2 Query: 674 LVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCML 495 L+P+PR+HF +V +AP+ S + LSV E+T ++ N M DPRHG+Y+ + Sbjct: 257 LIPFPRLHFFMVGFAPLTSRGSQQYSALSVPELTQQMWDAKNMMCAADPRHGRYLTASAV 316 Query: 494 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 315 +RG + K+V+ + I+ K + FV+W P K + + P G ++ A + Sbjct: 317 FRGKLSTKEVDEQMMNIQNKNSSYFVEWIPNNVKSSV----CDIAPKG----LKMASTFI 368 Query: 314 SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 147 N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ Sbjct: 369 GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 424 >At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis thaliana} Length = 444 Score = 130 bits (313), Expect = 1e-30 Identities = 59/176 (33%), Positives = 102/176 (57%) Frame = -2 Query: 674 LVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCML 495 L+P+PR+HF +V +AP+ S + LSV E+T ++ N M DPRHG+Y+ + Sbjct: 257 LIPFPRLHFFMVGFAPLTSRGSQQYSALSVPELTQQMWDAKNMMCAADPRHGRYLTASAV 316 Query: 494 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 315 +RG + K+V+ + ++ K + FV+W P K + + P G ++ A + Sbjct: 317 FRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSV----CDIAPTG----LKMASTFI 368 Query: 314 SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 147 N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ Sbjct: 369 GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 424 >At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis thaliana} Length = 449 Score = 129 bits (311), Expect = 2e-30 Identities = 58/176 (32%), Positives = 101/176 (57%) Frame = -2 Query: 674 LVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCML 495 L+P+PR+HF +V +AP+ S + L+V E+T ++ N M DPRHG+Y+ + Sbjct: 257 LIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAM 316 Query: 494 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 315 +RG + K+V+ + ++ K + FV+W P K + + P G + A + Sbjct: 317 FRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSV----CDIAPRG----LSMASTFI 368 Query: 314 SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 147 N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ Sbjct: 369 GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424 >At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin (TUBG2) identical to SP|P38558 Tubulin gamma-2 chain (Gamma-2 tubulin) {Arabidopsis thaliana} Length = 474 Score = 65.7 bits (153), Expect = 3e-11 Identities = 45/185 (24%), Positives = 92/185 (49%), Gaps = 10/185 (5%) Frame = -2 Query: 674 LVPYPRIHFPLVTYAPVISAEKA-YHEQLSVAEITNACFEPANQMVKCDPRH-----GKY 513 L+P PR HF + Y P+ +A + +V ++ + N MV R+ KY Sbjct: 260 LIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKY 319 Query: 512 MACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQ 333 ++ + +G+V P V+ ++ I+ ++ + F+DW P +V ++ + P V ++ + Sbjct: 320 ISILNIIQGEVDPTQVHESLQRIRERKLVNFIDWGPASIQVALSKKSPYVQTSHRVSGL- 378 Query: 332 RAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM----EEGEFSEAREDLAAL 165 ML++ T+I ++R ++D + K+AF+ Y M + EF E+R+ + +L Sbjct: 379 ----MLASHTSIRHLFSRCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIESL 434 Query: 164 EKDYE 150 +Y+ Sbjct: 435 VDEYK 439 >At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin (TUBG1) identical to SP|P38557 Tubulin gamma-1 chain (Gamma-1 tubulin) {Arabidopsis thaliana} Length = 474 Score = 62.9 bits (146), Expect = 2e-10 Identities = 43/185 (23%), Positives = 92/185 (49%), Gaps = 10/185 (5%) Frame = -2 Query: 674 LVPYPRIHFPLVTYAPVISAEKA-YHEQLSVAEITNACFEPANQMVKCDPRH-----GKY 513 L+P PR HF + Y P+ +A + +V ++ + N MV R+ KY Sbjct: 260 LIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKY 319 Query: 512 MACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQ 333 ++ + +G+V P V+ ++ I+ ++ + F++W P +V ++ + P V ++ + Sbjct: 320 ISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSKKSPYVQTAHRVSGL- 378 Query: 332 RAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM----EEGEFSEAREDLAAL 165 ML++ T+I +++ ++D + K+AF+ Y M + EF E+R+ + +L Sbjct: 379 ----MLASHTSIRHLFSKCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIESL 434 Query: 164 EKDYE 150 +Y+ Sbjct: 435 VDEYK 439 >At5g33320.1 68418.m03955 triose phosphate/phosphate translocator, putative similar to SWISS-PROT:P52178 triose phosphate/phosphate translocator [Cauliflower] {Brassica oleracea} Length = 408 Score = 32.7 bits (71), Expect = 0.28 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = -3 Query: 280 ALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTW 173 A ++S + +P+V+S S R WR SS P+R W Sbjct: 31 AASSSDLNVSPNVVSIPSLSRRSWRLASSDSPLRAW 66 >At3g62210.1 68416.m06989 expressed protein contains Pfam profile PF04396: Protein of unknown function, DUF537; expression supported by MPSS Length = 279 Score = 32.7 bits (71), Expect = 0.28 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Frame = +3 Query: 456 GRVHILGY-DVTTVQHTASHVLAMTGVAFHHLVGGLE 563 GRV I Y D + + H H L TG+ HH+ G++ Sbjct: 59 GRVSISAYGDTSGIPHVIQHALNSTGIELHHVPAGVK 95 >At2g40070.1 68415.m04923 expressed protein Length = 607 Score = 32.7 bits (71), Expect = 0.28 Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 2/102 (1%) Frame = -3 Query: 664 TPVSTS-HWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTV 488 TP+S S S +R + +PT ++ S S T S+P T +A P ++T L+ T Sbjct: 236 TPMSRSTSLSSSRLTPTASKPTTSTARSAGSVTR-STPSTTTKSAGPSRSTTPLSRS-TA 293 Query: 487 VTSYPRM*TRPSLPSKPSVLSNSSTGVQPV-SRSVSTTSHPP 365 +S P +RP+LP ++ +S+ +P+ S S +TT+ P Sbjct: 294 RSSTPT--SRPTLPPSKTISRSSTPTRRPIASASAATTTANP 333 >At1g29200.1 68414.m03573 hypothetical protein contains Pfam PF03138: Plant protein family. The function of this family of plant proteins is unknown; Length = 698 Score = 30.3 bits (65), Expect = 1.5 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = +3 Query: 375 LVVDTDLETGWTPVDELDSTLGFDGSDGRVHILGY 479 LV DT+L TPVD ++ L G VH+ GY Sbjct: 360 LVTDTELVKEATPVDYIEHVLPLLKKYGMVHLFGY 394 >At1g62870.1 68414.m07099 expressed protein Length = 796 Score = 29.5 bits (63), Expect = 2.6 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%) Frame = -3 Query: 688 EFQTNLCLTPVSTSHWSRTRQSSLPRR--PTMNSFPSPRSQTHASSPP 551 + + +LC S S+ SRT L R P NS P P S S PP Sbjct: 78 KLRCSLCDAVFSASNPSRTASEHLKRGTCPNFNSLPKPISTISPSPPP 125 >At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1) (NR2) {Arabidopsis thaliana} Length = 917 Score = 28.7 bits (61), Expect = 4.6 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = +2 Query: 152 RNPSRGQPGPHGLRRTLPPPYPHRRTSARKHAWRT*GRT 268 R +R +PG +G+ R+ PP P R S + H +T +T Sbjct: 8 RQYARLEPGLNGVVRSYKPPVPGRSDSPKAHQNQTTNQT 46 >At3g11690.1 68416.m01433 expressed protein Length = 252 Score = 28.3 bits (60), Expect = 6.1 Identities = 22/66 (33%), Positives = 30/66 (45%) Frame = -3 Query: 682 QTNLCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLA 503 QT TP S+ S RQ L R +++S PSPR+ S+P T A+ W Sbjct: 15 QTKPSDTPSSSPSRSNRRQPLLQR--SLSS-PSPRASCGGSTPAEFCGGTTASCAAVWCC 71 Query: 502 VCCTVV 485 C +V Sbjct: 72 CPCGLV 77 >At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) Length = 587 Score = 28.3 bits (60), Expect = 6.1 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Frame = -2 Query: 491 RGDVVPKDVNAAIATIKTKRTIQFVDWCPT-GFKVGINYQPPTVVPGGD 348 +G V D A T TK+ + DW P+ FK PP ++P D Sbjct: 308 QGVAVSSDKGAEANTTSTKKKVSSDDWEPSEPFKASFTI-PPYILPSSD 355 >At1g68080.1 68414.m07777 expressed protein Length = 383 Score = 28.3 bits (60), Expect = 6.1 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +3 Query: 417 DELDSTLGFDGSDGRVHILGYDVTTVQ 497 D + +GFD R+H+LG+DV ++Q Sbjct: 211 DGSNQNIGFDVCVARLHLLGFDVHSLQ 237 >At1g51660.1 68414.m05820 mitogen-activated protein kinase kinase (MAPKK), putative (MKK4) identical to MAP kinase kinase 4 [Arabidopsis thaliana] gi|3219271|dbj|BAA28830 gi_13265419 Length = 366 Score = 28.3 bits (60), Expect = 6.1 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 6/63 (9%) Frame = +2 Query: 65 ASAP*KIFHWLSTLRLPHPRLQRSPCRLLRNPS--RGQPG----PHGLRRTLPPPYPHRR 226 A+A + H++S P +RS +LL++P R P P L + LPPP P Sbjct: 301 ATASPEFRHFISCCLQREPGKRRSAMQLLQHPFILRASPSQNRSPQNLHQLLPPPRPLSS 360 Query: 227 TSA 235 +S+ Sbjct: 361 SSS 363 >At3g26855.1 68416.m03360 hypothetical protein Length = 163 Score = 27.9 bits (59), Expect = 8.0 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = -3 Query: 259 SCTPSVLSCTGTSVRVWRRESSPK 188 SC P +LS + VR W +SSPK Sbjct: 114 SCNPMLLSTFPSIVRAWDGKSSPK 137 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,910,609 Number of Sequences: 28952 Number of extensions: 397554 Number of successful extensions: 1543 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 1410 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1524 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1755792000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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