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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_M14
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...   231   1e-61
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ...    46   6e-06
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    31   0.25 
SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr 1||...    28   1.3  
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E...    27   3.1  
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    27   3.1  
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr...    26   5.4  
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.4  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.2  
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    25   9.5  
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    25   9.5  

>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score =  231 bits (564), Expect = 1e-61
 Identities = 102/156 (65%), Positives = 126/156 (80%)
 Frame = -3

Query: 515 QTEFTPQKYFSIDKVFRNETLDATHLAEFHQVEGVVADRGLGLADLITVLDAFFKRLGFD 336
           Q  F P KYFSID+VFRNET+DATHLAEFHQVEGV+ DR + L DLI  L+ FF ++   
Sbjct: 342 QNGFHPAKYFSIDRVFRNETVDATHLAEFHQVEGVICDRNITLGDLIGFLEVFFGKMNVK 401

Query: 335 QLQFKPAYNPYTEPSMEIFAYHTGLAKWIEIGNSGVFRPEMLLPMGLPEDVNVIAWGLSL 156
            L+FKPAYNPYTEPS+E+F+YH  L KW+E+GNSG+FRPEML PMGLP+DV  + +GLSL
Sbjct: 402 NLRFKPAYNPYTEPSLEVFSYHEKLGKWVEVGNSGMFRPEMLEPMGLPKDVRCLGFGLSL 461

Query: 155 ERPTMIKYGLNNIRDLVGPKVDLRMVYNNPICRLDK 48
           ERPTMIKYG+ +IR L+GPKV+L ++  +P  RLDK
Sbjct: 462 ERPTMIKYGVADIRQLIGPKVNLDLIEASPAVRLDK 497



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 21/38 (55%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = -2

Query: 642 HSKGGYGSQ-GYRYDWKIEEAQKNLLRTHTTAVSARML 532
           H  GG     GYR  + +EE +K +LRTHTTAVSA ML
Sbjct: 300 HENGGETKGIGYRAPFSLEETRKLVLRTHTTAVSANML 337



 Score = 35.1 bits (77), Expect = 0.012
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = -1

Query: 751 FQPQQXPARDXHDTFFXSSPAATTEFP 671
           F PQQ  ARD  DTFF   PA+T + P
Sbjct: 262 FVPQQHSARDAQDTFFLKVPASTDKLP 288


>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 429

 Score = 46.0 bits (104), Expect = 6e-06
 Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
 Frame = -3

Query: 344 GFDQLQFKPAYN--PYTEPSMEIFAYHTGLAKWIEIGNSGVFRPEMLLPMGLPEDVNVIA 171
           G +Q++++  Y+  P+T+PS ++     G  KW+EI   GV +  +L   GL    N I 
Sbjct: 239 GAEQVRYRWTYDSFPFTKPSFQLEIDWKG--KWLEILGCGVVQDRLLKGAGLN---NYIG 293

Query: 170 W--GLSLERPTMIKYGLNNIR 114
           W  G+ LER  MI YG+ +IR
Sbjct: 294 WAFGIGLERLAMILYGIPDIR 314



 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 527 RLAQQTEFTPQKYFSIDKVFRNETLDATHLAEFHQVEGVV 408
           RLA++  F    +     V+R + +D++H   FHQ+EG +
Sbjct: 124 RLAKEG-FKKNGFLITADVYRRDEVDSSHYPIFHQMEGAL 162


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 494 KYFSIDKVFRNETLDATHLAEFHQVEGVVA 405
           + F + K FRNE +DATH  EF   E   A
Sbjct: 273 RVFELGKNFRNEGIDATHNPEFTSCEAYCA 302


>SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 237

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 130 PYLIMVGRSRDRPHAITFTSSGRPMGSSISGLNTPELPISIHLA 261
           P  + +G S D   AI + S    +GSSI G    E P  +H++
Sbjct: 191 PLQLSMGMSSDYLLAIKYGSDSVRVGSSIFGSRPTEKPSDVHIS 234


>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
           EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +3

Query: 600 NRICNPGSHIHLYCALLHPLXVXMG 674
           +++  PG ++ + C L+HP+ +  G
Sbjct: 393 DKMVMPGDNVEMICTLIHPIVIEKG 417


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 494 KYFSIDKVFRNETLDATHLAEFHQVE 417
           + + I + FRNE  D TH  EF  +E
Sbjct: 318 RVYEIGRQFRNEGADLTHNPEFTSIE 343


>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +2

Query: 143 WWAARGTGPTLSRSRPQAGPWAAASQV*TPPNYQSLSIWRDRCGMRIFP 289
           W    G  PTLS+ +  +  WAA SQ+   P +    I  DRC   + P
Sbjct: 130 WLLVTGEIPTLSQVQALSADWAARSQL---PKFVEELI--DRCPPTLHP 173


>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 42  NSFIEPAYRVVVDHAQVDLGPDQVPDVVEPVLDHGGPLEGQAPR 173
           NS + PA R  V  A ++   +  P+VVEP      PL+  AP+
Sbjct: 296 NSDLTPA-RTPVTPAPLEKPVNLAPEVVEPTNAAASPLQLNAPK 338


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1038

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
 Frame = -3

Query: 407  ADRGLGLADLITVLDAFFKR--LGFDQL----QFKPAYNPYTEPSMEIFAYHTGLAKWIE 246
            AD      +    LDAF K   + FD L         YN + +   E  AY +GL  WI+
Sbjct: 874  ADNSETNLNYFATLDAFVKSPLMSFDGLGELGSTDQRYNFFNQKIQEYSAYDSGLDNWIQ 933


>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 176 IAWGLSLERPTMIKYGLNNIRDLVGPKV 93
           +AWGLSLE    I  GL ++ D+ GP +
Sbjct: 81  LAWGLSLEEDKQI--GLMDV-DICGPSI 105


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +3

Query: 9   FFFYQQSTDLFNSFIEPAYRVVVDHAQVDLGPDQVPDVVE 128
           F+ Y+ S++  N  +   +    D   +DL   QVP  +E
Sbjct: 214 FYSYKSSSNNLNQIVRFIFETTADMIGIDLAKRQVPIQLE 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,685,741
Number of Sequences: 5004
Number of extensions: 50021
Number of successful extensions: 164
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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