BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_T7_M14 (799 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 231 1e-61 SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ... 46 6e-06 SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|... 31 0.25 SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr 1||... 28 1.3 SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 27 3.1 SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 27 3.1 SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr... 26 5.4 SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.4 SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 7.2 SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa... 25 9.5 SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa... 25 9.5 >SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 499 Score = 231 bits (564), Expect = 1e-61 Identities = 102/156 (65%), Positives = 126/156 (80%) Frame = -3 Query: 515 QTEFTPQKYFSIDKVFRNETLDATHLAEFHQVEGVVADRGLGLADLITVLDAFFKRLGFD 336 Q F P KYFSID+VFRNET+DATHLAEFHQVEGV+ DR + L DLI L+ FF ++ Sbjct: 342 QNGFHPAKYFSIDRVFRNETVDATHLAEFHQVEGVICDRNITLGDLIGFLEVFFGKMNVK 401 Query: 335 QLQFKPAYNPYTEPSMEIFAYHTGLAKWIEIGNSGVFRPEMLLPMGLPEDVNVIAWGLSL 156 L+FKPAYNPYTEPS+E+F+YH L KW+E+GNSG+FRPEML PMGLP+DV + +GLSL Sbjct: 402 NLRFKPAYNPYTEPSLEVFSYHEKLGKWVEVGNSGMFRPEMLEPMGLPKDVRCLGFGLSL 461 Query: 155 ERPTMIKYGLNNIRDLVGPKVDLRMVYNNPICRLDK 48 ERPTMIKYG+ +IR L+GPKV+L ++ +P RLDK Sbjct: 462 ERPTMIKYGVADIRQLIGPKVNLDLIEASPAVRLDK 497 Score = 41.1 bits (92), Expect = 2e-04 Identities = 21/38 (55%), Positives = 25/38 (65%), Gaps = 1/38 (2%) Frame = -2 Query: 642 HSKGGYGSQ-GYRYDWKIEEAQKNLLRTHTTAVSARML 532 H GG GYR + +EE +K +LRTHTTAVSA ML Sbjct: 300 HENGGETKGIGYRAPFSLEETRKLVLRTHTTAVSANML 337 Score = 35.1 bits (77), Expect = 0.012 Identities = 15/27 (55%), Positives = 17/27 (62%) Frame = -1 Query: 751 FQPQQXPARDXHDTFFXSSPAATTEFP 671 F PQQ ARD DTFF PA+T + P Sbjct: 262 FVPQQHSARDAQDTFFLKVPASTDKLP 288 >SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces pombe|chr 3|||Manual Length = 429 Score = 46.0 bits (104), Expect = 6e-06 Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 4/81 (4%) Frame = -3 Query: 344 GFDQLQFKPAYN--PYTEPSMEIFAYHTGLAKWIEIGNSGVFRPEMLLPMGLPEDVNVIA 171 G +Q++++ Y+ P+T+PS ++ G KW+EI GV + +L GL N I Sbjct: 239 GAEQVRYRWTYDSFPFTKPSFQLEIDWKG--KWLEILGCGVVQDRLLKGAGLN---NYIG 293 Query: 170 W--GLSLERPTMIKYGLNNIR 114 W G+ LER MI YG+ +IR Sbjct: 294 WAFGIGLERLAMILYGIPDIR 314 Score = 27.9 bits (59), Expect = 1.8 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = -3 Query: 527 RLAQQTEFTPQKYFSIDKVFRNETLDATHLAEFHQVEGVV 408 RLA++ F + V+R + +D++H FHQ+EG + Sbjct: 124 RLAKEG-FKKNGFLITADVYRRDEVDSSHYPIFHQMEGAL 162 >SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|||Manual Length = 531 Score = 30.7 bits (66), Expect = 0.25 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = -3 Query: 494 KYFSIDKVFRNETLDATHLAEFHQVEGVVA 405 + F + K FRNE +DATH EF E A Sbjct: 273 RVFELGKNFRNEGIDATHNPEFTSCEAYCA 302 >SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr 1|||Manual Length = 237 Score = 28.3 bits (60), Expect = 1.3 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = +1 Query: 130 PYLIMVGRSRDRPHAITFTSSGRPMGSSISGLNTPELPISIHLA 261 P + +G S D AI + S +GSSI G E P +H++ Sbjct: 191 PLQLSMGMSSDYLLAIKYGSDSVRVGSSIFGSRPTEKPSDVHIS 234 >SPBC9B6.04c |tuf1||mitochondrial translation elongation factor EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 439 Score = 27.1 bits (57), Expect = 3.1 Identities = 7/25 (28%), Positives = 16/25 (64%) Frame = +3 Query: 600 NRICNPGSHIHLYCALLHPLXVXMG 674 +++ PG ++ + C L+HP+ + G Sbjct: 393 DKMVMPGDNVEMICTLIHPIVIEKG 417 >SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 2|||Manual Length = 591 Score = 27.1 bits (57), Expect = 3.1 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -3 Query: 494 KYFSIDKVFRNETLDATHLAEFHQVE 417 + + I + FRNE D TH EF +E Sbjct: 318 RVYEIGRQFRNEGADLTHNPEFTSIE 343 >SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr 1|||Manual Length = 473 Score = 26.2 bits (55), Expect = 5.4 Identities = 17/49 (34%), Positives = 23/49 (46%) Frame = +2 Query: 143 WWAARGTGPTLSRSRPQAGPWAAASQV*TPPNYQSLSIWRDRCGMRIFP 289 W G PTLS+ + + WAA SQ+ P + I DRC + P Sbjct: 130 WLLVTGEIPTLSQVQALSADWAARSQL---PKFVEELI--DRCPPTLHP 173 >SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 489 Score = 26.2 bits (55), Expect = 5.4 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = +3 Query: 42 NSFIEPAYRVVVDHAQVDLGPDQVPDVVEPVLDHGGPLEGQAPR 173 NS + PA R V A ++ + P+VVEP PL+ AP+ Sbjct: 296 NSDLTPA-RTPVTPAPLEKPVNLAPEVVEPTNAAASPLQLNAPK 338 >SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 1038 Score = 25.8 bits (54), Expect = 7.2 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 6/60 (10%) Frame = -3 Query: 407 ADRGLGLADLITVLDAFFKR--LGFDQL----QFKPAYNPYTEPSMEIFAYHTGLAKWIE 246 AD + LDAF K + FD L YN + + E AY +GL WI+ Sbjct: 874 ADNSETNLNYFATLDAFVKSPLMSFDGLGELGSTDQRYNFFNQKIQEYSAYDSGLDNWIQ 933 >SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosaccharomyces pombe|chr 1|||Manual Length = 317 Score = 25.4 bits (53), Expect = 9.5 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = -3 Query: 176 IAWGLSLERPTMIKYGLNNIRDLVGPKV 93 +AWGLSLE I GL ++ D+ GP + Sbjct: 81 LAWGLSLEEDKQI--GLMDV-DICGPSI 105 >SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosaccharomyces pombe|chr 1|||Manual Length = 522 Score = 25.4 bits (53), Expect = 9.5 Identities = 11/40 (27%), Positives = 19/40 (47%) Frame = +3 Query: 9 FFFYQQSTDLFNSFIEPAYRVVVDHAQVDLGPDQVPDVVE 128 F+ Y+ S++ N + + D +DL QVP +E Sbjct: 214 FYSYKSSSNNLNQIVRFIFETTADMIGIDLAKRQVPIQLE 253 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,685,741 Number of Sequences: 5004 Number of extensions: 50021 Number of successful extensions: 164 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 158 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 164 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 389395636 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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