Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_M14
(799 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10782| Best HMM Match : No HMM Matches (HMM E-Value=.) 271 5e-73
SB_44329| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1) 29 4.4
SB_52551| Best HMM Match : NUC130_3NT (HMM E-Value=6.4) 28 7.6
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0) 28 7.6
SB_20967| Best HMM Match : FDX-ACB (HMM E-Value=2.2e-07) 28 7.6
SB_45720| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_10782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 399
Score = 271 bits (664), Expect = 5e-73
Identities = 120/159 (75%), Positives = 140/159 (88%)
Frame = -3
Query: 527 RLAQQTEFTPQKYFSIDKVFRNETLDATHLAEFHQVEGVVADRGLGLADLITVLDAFFKR 348
+L QQ +FTP K+FSID+VFRNETLDATHLAEFHQ+EG+VADR L L DLI L FF++
Sbjct: 240 KLGQQEKFTPAKFFSIDRVFRNETLDATHLAEFHQIEGLVADRNLTLGDLIGTLHQFFRK 299
Query: 347 LGFDQLQFKPAYNPYTEPSMEIFAYHTGLAKWIEIGNSGVFRPEMLLPMGLPEDVNVIAW 168
LG +L+FKPAYNPYTEPSME+F+YH GL KW+E+GNSGVFRPEML PMGLP+DV+VIAW
Sbjct: 300 LGITKLRFKPAYNPYTEPSMEVFSYHEGLKKWVEVGNSGVFRPEMLRPMGLPDDVSVIAW 359
Query: 167 GLSLERPTMIKYGLNNIRDLVGPKVDLRMVYNNPICRLD 51
GLSLERPTMIKYG++NIRDL+G KVDL MVY NPIC L+
Sbjct: 360 GLSLERPTMIKYGISNIRDLIGHKVDLDMVYRNPICLLE 398
Score = 58.8 bits (136), Expect = 5e-09
Identities = 26/41 (63%), Positives = 32/41 (78%)
Frame = -2
Query: 615 GYRYDWKIEEAQKNLLRTHTTAVSARMLXPAGAADRVHSAE 493
GY+Y+WK EEA+KNLLRTHTTAVSARML G ++ A+
Sbjct: 211 GYQYEWKTEEAKKNLLRTHTTAVSARMLYKLGQQEKFTPAK 251
>SB_44329| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 423
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -3
Query: 332 LQFKPAYNPYTEPSMEIFAYHTGLAKWIEIGNSGVFRPEMLL 207
L ++ N Y E + E A H G+ KW GN F P +L
Sbjct: 222 LSYRQRLNVYKE-NWEKLAVHFGILKWASTGNLEKFSPAEIL 262
>SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1283
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +3
Query: 81 HAQVDLGPDQVPDVVEPVLDHGGPLEGQAPRYHVHVLRQAHG--QQHLRSEHP 233
H ++ GP ++P + H GP +G + VH R H +HL EHP
Sbjct: 897 HPFIEQGPVEIP------ISHSGPWQGDIDSHMVHADRHLHDHPDRHLH-EHP 942
>SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1)
Length = 682
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +3
Query: 81 HAQVDLGPDQVPDVVEPVLDHGGPLEGQAPRYHVHVLRQAHG--QQHLRSEHP 233
H ++ GP ++P + H GP +G + VH R H +HL EHP
Sbjct: 30 HPFIEQGPVEIP------ISHSGPWQGDIDSHMVHADRHLHDHPDRHLH-EHP 75
>SB_52551| Best HMM Match : NUC130_3NT (HMM E-Value=6.4)
Length = 363
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -3
Query: 284 IFAYHTGLAK-WIEIGNSGVFRPEMLLPMGLPEDVNVIAWGLSLE 153
I+ + GLA+ W+ + N VFRP+ + +G E V + L LE
Sbjct: 220 IYTSNPGLAEGWVAVNNKVVFRPDSMDSLG-KEQVGFLLDPLGLE 263
>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
Length = 2442
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 100 GPTRSRMLLSPYLIMVGRSRDRPHAITFTSSGRPMGSSISGLNTPELPISI 252
GP + + L L+ G SR + FTS+ P S +TP+ P+++
Sbjct: 1291 GPAKRQQSLGISLLQTGPSRSALPSSFFTSTPMPGTPRTSERSTPDTPLNL 1341
>SB_20967| Best HMM Match : FDX-ACB (HMM E-Value=2.2e-07)
Length = 318
Score = 28.3 bits (60), Expect = 7.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 473 VFRNETLDATHLAEFHQVEGV 411
V+R + +D+ H FHQ+EGV
Sbjct: 183 VYRRDEIDSCHYPVFHQMEGV 203
>SB_45720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/50 (28%), Positives = 20/50 (40%)
Frame = -2
Query: 216 DAAAHGPA*GRERDSVGPVPRAAHHDQVRAQQHPGPGRAQGRPAHGLQQP 67
+ AH P E + G P HH++ HP PG+ G+ P
Sbjct: 131 ERGAHPPGQHHEEEERGAHPPGQHHEEEERGVHP-PGQHHEEEERGVHPP 179
>SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3408
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -3
Query: 284 IFAYHTGLAK-WIEIGNSGVFRPEMLLPMGLPEDVNVIAWGLSLE 153
I+ + GLA+ W+ + N VFRP+ + +G E V + L LE
Sbjct: 4 IYTSNPGLAEGWVAVNNKVVFRPDSMDSLG-KEQVGFLLDPLGLE 47
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,341,614
Number of Sequences: 59808
Number of extensions: 426734
Number of successful extensions: 1182
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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