BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_T7_M14 (799 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF000263-6|AAO21394.1| 496|Caenorhabditis elegans Phenylalanyl ... 264 4e-71 AF000263-5|AAG00015.1| 552|Caenorhabditis elegans Phenylalanyl ... 264 4e-71 AL132943-13|CAC14396.3| 458|Caenorhabditis elegans Hypothetical... 49 4e-06 AL117207-24|CAB60398.3| 458|Caenorhabditis elegans Hypothetical... 49 4e-06 AB096637-1|BAC76737.1| 458|Caenorhabditis elegans mitochondrial... 49 4e-06 Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr... 32 0.41 AL132948-8|CAC51068.1| 230|Caenorhabditis elegans Hypothetical ... 28 6.7 U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 28 8.9 U41105-3|AAX88810.1| 514|Caenorhabditis elegans Lysyl (k) trna ... 28 8.9 U41105-2|AAK68395.1| 596|Caenorhabditis elegans Lysyl (k) trna ... 28 8.9 U41105-1|AAA82396.1| 572|Caenorhabditis elegans Lysyl (k) trna ... 28 8.9 >AF000263-6|AAO21394.1| 496|Caenorhabditis elegans Phenylalanyl (f) trna synthetaseprotein 1, isoform b protein. Length = 496 Score = 264 bits (648), Expect = 4e-71 Identities = 121/160 (75%), Positives = 136/160 (85%) Frame = -3 Query: 527 RLAQQTEFTPQKYFSIDKVFRNETLDATHLAEFHQVEGVVADRGLGLADLITVLDAFFKR 348 +LAQ+ F P K FSID+VFRNETLDATHLAEFHQVEGV+A++ L LA LI + FFK+ Sbjct: 338 QLAQEG-FRPSKLFSIDRVFRNETLDATHLAEFHQVEGVIAEKNLSLAHLIGIFTEFFKK 396 Query: 347 LGFDQLQFKPAYNPYTEPSMEIFAYHTGLAKWIEIGNSGVFRPEMLLPMGLPEDVNVIAW 168 LG L+FKP YNPYTEPSMEIFAYH GL KW+EIGNSG+FRPEMLLPMGLP DVNV + Sbjct: 397 LGITNLRFKPTYNPYTEPSMEIFAYHQGLTKWVEIGNSGMFRPEMLLPMGLPADVNVAGY 456 Query: 167 GLSLERPTMIKYGLNNIRDLVGPKVDLRMVYNNPICRLDK 48 GLSLERPTMIKYG+NNIRDL G K+DL +VYNNPICRLDK Sbjct: 457 GLSLERPTMIKYGINNIRDLFGSKIDLNVVYNNPICRLDK 496 Score = 77.8 bits (183), Expect = 8e-15 Identities = 34/38 (89%), Positives = 35/38 (92%) Frame = -2 Query: 645 VHSKGGYGSQGYRYDWKIEEAQKNLLRTHTTAVSARML 532 VHSKGGYGS GY YDWKIEEAQKN+LRTHTTAVSAR L Sbjct: 299 VHSKGGYGSAGYNYDWKIEEAQKNVLRTHTTAVSARQL 336 Score = 49.2 bits (112), Expect = 3e-06 Identities = 20/27 (74%), Positives = 22/27 (81%) Frame = -1 Query: 751 FQPQQXPARDXHDTFFXSSPAATTEFP 671 FQPQQ PARD HDTFF S PA +T+FP Sbjct: 263 FQPQQHPARDAHDTFFVSDPAISTKFP 289 >AF000263-5|AAG00015.1| 552|Caenorhabditis elegans Phenylalanyl (f) trna synthetaseprotein 1, isoform a protein. Length = 552 Score = 264 bits (648), Expect = 4e-71 Identities = 121/160 (75%), Positives = 136/160 (85%) Frame = -3 Query: 527 RLAQQTEFTPQKYFSIDKVFRNETLDATHLAEFHQVEGVVADRGLGLADLITVLDAFFKR 348 +LAQ+ F P K FSID+VFRNETLDATHLAEFHQVEGV+A++ L LA LI + FFK+ Sbjct: 394 QLAQEG-FRPSKLFSIDRVFRNETLDATHLAEFHQVEGVIAEKNLSLAHLIGIFTEFFKK 452 Query: 347 LGFDQLQFKPAYNPYTEPSMEIFAYHTGLAKWIEIGNSGVFRPEMLLPMGLPEDVNVIAW 168 LG L+FKP YNPYTEPSMEIFAYH GL KW+EIGNSG+FRPEMLLPMGLP DVNV + Sbjct: 453 LGITNLRFKPTYNPYTEPSMEIFAYHQGLTKWVEIGNSGMFRPEMLLPMGLPADVNVAGY 512 Query: 167 GLSLERPTMIKYGLNNIRDLVGPKVDLRMVYNNPICRLDK 48 GLSLERPTMIKYG+NNIRDL G K+DL +VYNNPICRLDK Sbjct: 513 GLSLERPTMIKYGINNIRDLFGSKIDLNVVYNNPICRLDK 552 Score = 77.8 bits (183), Expect = 8e-15 Identities = 34/38 (89%), Positives = 35/38 (92%) Frame = -2 Query: 645 VHSKGGYGSQGYRYDWKIEEAQKNLLRTHTTAVSARML 532 VHSKGGYGS GY YDWKIEEAQKN+LRTHTTAVSAR L Sbjct: 355 VHSKGGYGSAGYNYDWKIEEAQKNVLRTHTTAVSARQL 392 Score = 49.2 bits (112), Expect = 3e-06 Identities = 20/27 (74%), Positives = 22/27 (81%) Frame = -1 Query: 751 FQPQQXPARDXHDTFFXSSPAATTEFP 671 FQPQQ PARD HDTFF S PA +T+FP Sbjct: 319 FQPQQHPARDAHDTFFVSDPAISTKFP 345 >AL132943-13|CAC14396.3| 458|Caenorhabditis elegans Hypothetical protein Y60A3A.13 protein. Length = 458 Score = 48.8 bits (111), Expect = 4e-06 Identities = 23/68 (33%), Positives = 41/68 (60%) Frame = -3 Query: 317 AYNPYTEPSMEIFAYHTGLAKWIEIGNSGVFRPEMLLPMGLPEDVNVIAWGLSLERPTMI 138 AY P+T PS E+ ++ G +W+E+ G+ ++L G+ + + A+G+ LER M+ Sbjct: 271 AYFPFTHPSWELEVFYNG--QWLEVLGCGIMEQKLLESAGVTDKIGW-AFGIGLERIAMV 327 Query: 137 KYGLNNIR 114 YG+ +IR Sbjct: 328 LYGIPDIR 335 Score = 30.7 bits (66), Expect = 1.3 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -3 Query: 491 YFSIDKVFRNETLDATHLAEFHQVEGV 411 + I V+R + +D TH FHQ+EGV Sbjct: 170 FLVIGDVYRRDEVDRTHYPCFHQIEGV 196 >AL117207-24|CAB60398.3| 458|Caenorhabditis elegans Hypothetical protein Y60A3A.13 protein. Length = 458 Score = 48.8 bits (111), Expect = 4e-06 Identities = 23/68 (33%), Positives = 41/68 (60%) Frame = -3 Query: 317 AYNPYTEPSMEIFAYHTGLAKWIEIGNSGVFRPEMLLPMGLPEDVNVIAWGLSLERPTMI 138 AY P+T PS E+ ++ G +W+E+ G+ ++L G+ + + A+G+ LER M+ Sbjct: 271 AYFPFTHPSWELEVFYNG--QWLEVLGCGIMEQKLLESAGVTDKIGW-AFGIGLERIAMV 327 Query: 137 KYGLNNIR 114 YG+ +IR Sbjct: 328 LYGIPDIR 335 Score = 30.7 bits (66), Expect = 1.3 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -3 Query: 491 YFSIDKVFRNETLDATHLAEFHQVEGV 411 + I V+R + +D TH FHQ+EGV Sbjct: 170 FLVIGDVYRRDEVDRTHYPCFHQIEGV 196 >AB096637-1|BAC76737.1| 458|Caenorhabditis elegans mitochondrial phenylalanyl-tRNAsynthetase protein. Length = 458 Score = 48.8 bits (111), Expect = 4e-06 Identities = 23/68 (33%), Positives = 41/68 (60%) Frame = -3 Query: 317 AYNPYTEPSMEIFAYHTGLAKWIEIGNSGVFRPEMLLPMGLPEDVNVIAWGLSLERPTMI 138 AY P+T PS E+ ++ G +W+E+ G+ ++L G+ + + A+G+ LER M+ Sbjct: 271 AYFPFTHPSWELEVFYNG--QWLEVLGCGIMEQKLLESAGVTDKIGW-AFGIGLERIAMV 327 Query: 137 KYGLNNIR 114 YG+ +IR Sbjct: 328 LYGIPDIR 335 Score = 30.7 bits (66), Expect = 1.3 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -3 Query: 491 YFSIDKVFRNETLDATHLAEFHQVEGV 411 + I V+R + +D TH FHQ+EGV Sbjct: 170 FLVIGDVYRRDEVDRTHYPCFHQIEGV 196 >Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical protein T20G5.1 protein. Length = 1681 Score = 32.3 bits (70), Expect = 0.41 Identities = 18/57 (31%), Positives = 30/57 (52%) Frame = -3 Query: 521 AQQTEFTPQKYFSIDKVFRNETLDATHLAEFHQVEGVVADRGLGLADLITVLDAFFK 351 A++ F P F + ++ RN D H A+F Q+ ++ G LADL ++D F + Sbjct: 503 AKRVGFQPDYLFQLRQILRNSNPD--HGAKFAQLLVSESENGEPLADLSQIIDCFME 557 >AL132948-8|CAC51068.1| 230|Caenorhabditis elegans Hypothetical protein Y39B6A.9 protein. Length = 230 Score = 28.3 bits (60), Expect = 6.7 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = -2 Query: 636 KGGYGSQGYRYDWKIEEAQKN 574 +GGY QG+ WK EAQKN Sbjct: 195 QGGYAKQGHEEGWK-NEAQKN 214 >U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedgehog-like family)protein 6 protein. Length = 559 Score = 27.9 bits (59), Expect = 8.9 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = +3 Query: 162 QAPRYHVHVLRQAHGQQHLRSEHPRITNLYPFGETGVVCEY 284 Q P+ V R A G ++ +PR+ + YPF VV Y Sbjct: 31 QVPQQQVQQFRPA-GNVYIAQPNPRVVSQYPFRSAPVVRPY 70 >U41105-3|AAX88810.1| 514|Caenorhabditis elegans Lysyl (k) trna synthetase protein1, isoform c protein. Length = 514 Score = 27.9 bits (59), Expect = 8.9 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%) Frame = -3 Query: 494 KYFSIDKVFRNETLDATHLAEFHQVEGVVA----DRGLGLA-DLITVLDAFFKRLGFDQL 330 + + + ++FRNE +D TH EF E +A + + L DL++ + K G ++ Sbjct: 235 RVYEVGRLFRNEGIDLTHNPEFTTCEFYMAYADYEDVIQLTEDLLSSMVMSIK--GTYKI 292 Query: 329 QFKPAYNPYTEPSMEI 282 ++ P P TEP E+ Sbjct: 293 EYHP-NGPNTEPVYEV 307 >U41105-2|AAK68395.1| 596|Caenorhabditis elegans Lysyl (k) trna synthetase protein1, isoform b protein. Length = 596 Score = 27.9 bits (59), Expect = 8.9 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%) Frame = -3 Query: 494 KYFSIDKVFRNETLDATHLAEFHQVEGVVA----DRGLGLA-DLITVLDAFFKRLGFDQL 330 + + + ++FRNE +D TH EF E +A + + L DL++ + K G ++ Sbjct: 317 RVYEVGRLFRNEGIDLTHNPEFTTCEFYMAYADYEDVIQLTEDLLSSMVMSIK--GTYKI 374 Query: 329 QFKPAYNPYTEPSMEI 282 ++ P P TEP E+ Sbjct: 375 EYHP-NGPNTEPVYEV 389 >U41105-1|AAA82396.1| 572|Caenorhabditis elegans Lysyl (k) trna synthetase protein1, isoform a protein. Length = 572 Score = 27.9 bits (59), Expect = 8.9 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%) Frame = -3 Query: 494 KYFSIDKVFRNETLDATHLAEFHQVEGVVA----DRGLGLA-DLITVLDAFFKRLGFDQL 330 + + + ++FRNE +D TH EF E +A + + L DL++ + K G ++ Sbjct: 293 RVYEVGRLFRNEGIDLTHNPEFTTCEFYMAYADYEDVIQLTEDLLSSMVMSIK--GTYKI 350 Query: 329 QFKPAYNPYTEPSMEI 282 ++ P P TEP E+ Sbjct: 351 EYHP-NGPNTEPVYEV 365 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,356,892 Number of Sequences: 27780 Number of extensions: 308124 Number of successful extensions: 980 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 923 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 980 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1945792630 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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