Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_M14
(799 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000263-6|AAO21394.1| 496|Caenorhabditis elegans Phenylalanyl ... 264 4e-71
AF000263-5|AAG00015.1| 552|Caenorhabditis elegans Phenylalanyl ... 264 4e-71
AL132943-13|CAC14396.3| 458|Caenorhabditis elegans Hypothetical... 49 4e-06
AL117207-24|CAB60398.3| 458|Caenorhabditis elegans Hypothetical... 49 4e-06
AB096637-1|BAC76737.1| 458|Caenorhabditis elegans mitochondrial... 49 4e-06
Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr... 32 0.41
AL132948-8|CAC51068.1| 230|Caenorhabditis elegans Hypothetical ... 28 6.7
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 28 8.9
U41105-3|AAX88810.1| 514|Caenorhabditis elegans Lysyl (k) trna ... 28 8.9
U41105-2|AAK68395.1| 596|Caenorhabditis elegans Lysyl (k) trna ... 28 8.9
U41105-1|AAA82396.1| 572|Caenorhabditis elegans Lysyl (k) trna ... 28 8.9
>AF000263-6|AAO21394.1| 496|Caenorhabditis elegans Phenylalanyl (f)
trna synthetaseprotein 1, isoform b protein.
Length = 496
Score = 264 bits (648), Expect = 4e-71
Identities = 121/160 (75%), Positives = 136/160 (85%)
Frame = -3
Query: 527 RLAQQTEFTPQKYFSIDKVFRNETLDATHLAEFHQVEGVVADRGLGLADLITVLDAFFKR 348
+LAQ+ F P K FSID+VFRNETLDATHLAEFHQVEGV+A++ L LA LI + FFK+
Sbjct: 338 QLAQEG-FRPSKLFSIDRVFRNETLDATHLAEFHQVEGVIAEKNLSLAHLIGIFTEFFKK 396
Query: 347 LGFDQLQFKPAYNPYTEPSMEIFAYHTGLAKWIEIGNSGVFRPEMLLPMGLPEDVNVIAW 168
LG L+FKP YNPYTEPSMEIFAYH GL KW+EIGNSG+FRPEMLLPMGLP DVNV +
Sbjct: 397 LGITNLRFKPTYNPYTEPSMEIFAYHQGLTKWVEIGNSGMFRPEMLLPMGLPADVNVAGY 456
Query: 167 GLSLERPTMIKYGLNNIRDLVGPKVDLRMVYNNPICRLDK 48
GLSLERPTMIKYG+NNIRDL G K+DL +VYNNPICRLDK
Sbjct: 457 GLSLERPTMIKYGINNIRDLFGSKIDLNVVYNNPICRLDK 496
Score = 77.8 bits (183), Expect = 8e-15
Identities = 34/38 (89%), Positives = 35/38 (92%)
Frame = -2
Query: 645 VHSKGGYGSQGYRYDWKIEEAQKNLLRTHTTAVSARML 532
VHSKGGYGS GY YDWKIEEAQKN+LRTHTTAVSAR L
Sbjct: 299 VHSKGGYGSAGYNYDWKIEEAQKNVLRTHTTAVSARQL 336
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = -1
Query: 751 FQPQQXPARDXHDTFFXSSPAATTEFP 671
FQPQQ PARD HDTFF S PA +T+FP
Sbjct: 263 FQPQQHPARDAHDTFFVSDPAISTKFP 289
>AF000263-5|AAG00015.1| 552|Caenorhabditis elegans Phenylalanyl (f)
trna synthetaseprotein 1, isoform a protein.
Length = 552
Score = 264 bits (648), Expect = 4e-71
Identities = 121/160 (75%), Positives = 136/160 (85%)
Frame = -3
Query: 527 RLAQQTEFTPQKYFSIDKVFRNETLDATHLAEFHQVEGVVADRGLGLADLITVLDAFFKR 348
+LAQ+ F P K FSID+VFRNETLDATHLAEFHQVEGV+A++ L LA LI + FFK+
Sbjct: 394 QLAQEG-FRPSKLFSIDRVFRNETLDATHLAEFHQVEGVIAEKNLSLAHLIGIFTEFFKK 452
Query: 347 LGFDQLQFKPAYNPYTEPSMEIFAYHTGLAKWIEIGNSGVFRPEMLLPMGLPEDVNVIAW 168
LG L+FKP YNPYTEPSMEIFAYH GL KW+EIGNSG+FRPEMLLPMGLP DVNV +
Sbjct: 453 LGITNLRFKPTYNPYTEPSMEIFAYHQGLTKWVEIGNSGMFRPEMLLPMGLPADVNVAGY 512
Query: 167 GLSLERPTMIKYGLNNIRDLVGPKVDLRMVYNNPICRLDK 48
GLSLERPTMIKYG+NNIRDL G K+DL +VYNNPICRLDK
Sbjct: 513 GLSLERPTMIKYGINNIRDLFGSKIDLNVVYNNPICRLDK 552
Score = 77.8 bits (183), Expect = 8e-15
Identities = 34/38 (89%), Positives = 35/38 (92%)
Frame = -2
Query: 645 VHSKGGYGSQGYRYDWKIEEAQKNLLRTHTTAVSARML 532
VHSKGGYGS GY YDWKIEEAQKN+LRTHTTAVSAR L
Sbjct: 355 VHSKGGYGSAGYNYDWKIEEAQKNVLRTHTTAVSARQL 392
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = -1
Query: 751 FQPQQXPARDXHDTFFXSSPAATTEFP 671
FQPQQ PARD HDTFF S PA +T+FP
Sbjct: 319 FQPQQHPARDAHDTFFVSDPAISTKFP 345
>AL132943-13|CAC14396.3| 458|Caenorhabditis elegans Hypothetical
protein Y60A3A.13 protein.
Length = 458
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/68 (33%), Positives = 41/68 (60%)
Frame = -3
Query: 317 AYNPYTEPSMEIFAYHTGLAKWIEIGNSGVFRPEMLLPMGLPEDVNVIAWGLSLERPTMI 138
AY P+T PS E+ ++ G +W+E+ G+ ++L G+ + + A+G+ LER M+
Sbjct: 271 AYFPFTHPSWELEVFYNG--QWLEVLGCGIMEQKLLESAGVTDKIGW-AFGIGLERIAMV 327
Query: 137 KYGLNNIR 114
YG+ +IR
Sbjct: 328 LYGIPDIR 335
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 491 YFSIDKVFRNETLDATHLAEFHQVEGV 411
+ I V+R + +D TH FHQ+EGV
Sbjct: 170 FLVIGDVYRRDEVDRTHYPCFHQIEGV 196
>AL117207-24|CAB60398.3| 458|Caenorhabditis elegans Hypothetical
protein Y60A3A.13 protein.
Length = 458
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/68 (33%), Positives = 41/68 (60%)
Frame = -3
Query: 317 AYNPYTEPSMEIFAYHTGLAKWIEIGNSGVFRPEMLLPMGLPEDVNVIAWGLSLERPTMI 138
AY P+T PS E+ ++ G +W+E+ G+ ++L G+ + + A+G+ LER M+
Sbjct: 271 AYFPFTHPSWELEVFYNG--QWLEVLGCGIMEQKLLESAGVTDKIGW-AFGIGLERIAMV 327
Query: 137 KYGLNNIR 114
YG+ +IR
Sbjct: 328 LYGIPDIR 335
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 491 YFSIDKVFRNETLDATHLAEFHQVEGV 411
+ I V+R + +D TH FHQ+EGV
Sbjct: 170 FLVIGDVYRRDEVDRTHYPCFHQIEGV 196
>AB096637-1|BAC76737.1| 458|Caenorhabditis elegans mitochondrial
phenylalanyl-tRNAsynthetase protein.
Length = 458
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/68 (33%), Positives = 41/68 (60%)
Frame = -3
Query: 317 AYNPYTEPSMEIFAYHTGLAKWIEIGNSGVFRPEMLLPMGLPEDVNVIAWGLSLERPTMI 138
AY P+T PS E+ ++ G +W+E+ G+ ++L G+ + + A+G+ LER M+
Sbjct: 271 AYFPFTHPSWELEVFYNG--QWLEVLGCGIMEQKLLESAGVTDKIGW-AFGIGLERIAMV 327
Query: 137 KYGLNNIR 114
YG+ +IR
Sbjct: 328 LYGIPDIR 335
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 491 YFSIDKVFRNETLDATHLAEFHQVEGV 411
+ I V+R + +D TH FHQ+EGV
Sbjct: 170 FLVIGDVYRRDEVDRTHYPCFHQIEGV 196
>Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical
protein T20G5.1 protein.
Length = 1681
Score = 32.3 bits (70), Expect = 0.41
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = -3
Query: 521 AQQTEFTPQKYFSIDKVFRNETLDATHLAEFHQVEGVVADRGLGLADLITVLDAFFK 351
A++ F P F + ++ RN D H A+F Q+ ++ G LADL ++D F +
Sbjct: 503 AKRVGFQPDYLFQLRQILRNSNPD--HGAKFAQLLVSESENGEPLADLSQIIDCFME 557
>AL132948-8|CAC51068.1| 230|Caenorhabditis elegans Hypothetical
protein Y39B6A.9 protein.
Length = 230
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 636 KGGYGSQGYRYDWKIEEAQKN 574
+GGY QG+ WK EAQKN
Sbjct: 195 QGGYAKQGHEEGWK-NEAQKN 214
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 162 QAPRYHVHVLRQAHGQQHLRSEHPRITNLYPFGETGVVCEY 284
Q P+ V R A G ++ +PR+ + YPF VV Y
Sbjct: 31 QVPQQQVQQFRPA-GNVYIAQPNPRVVSQYPFRSAPVVRPY 70
>U41105-3|AAX88810.1| 514|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform c protein.
Length = 514
Score = 27.9 bits (59), Expect = 8.9
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = -3
Query: 494 KYFSIDKVFRNETLDATHLAEFHQVEGVVA----DRGLGLA-DLITVLDAFFKRLGFDQL 330
+ + + ++FRNE +D TH EF E +A + + L DL++ + K G ++
Sbjct: 235 RVYEVGRLFRNEGIDLTHNPEFTTCEFYMAYADYEDVIQLTEDLLSSMVMSIK--GTYKI 292
Query: 329 QFKPAYNPYTEPSMEI 282
++ P P TEP E+
Sbjct: 293 EYHP-NGPNTEPVYEV 307
>U41105-2|AAK68395.1| 596|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform b protein.
Length = 596
Score = 27.9 bits (59), Expect = 8.9
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = -3
Query: 494 KYFSIDKVFRNETLDATHLAEFHQVEGVVA----DRGLGLA-DLITVLDAFFKRLGFDQL 330
+ + + ++FRNE +D TH EF E +A + + L DL++ + K G ++
Sbjct: 317 RVYEVGRLFRNEGIDLTHNPEFTTCEFYMAYADYEDVIQLTEDLLSSMVMSIK--GTYKI 374
Query: 329 QFKPAYNPYTEPSMEI 282
++ P P TEP E+
Sbjct: 375 EYHP-NGPNTEPVYEV 389
>U41105-1|AAA82396.1| 572|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform a protein.
Length = 572
Score = 27.9 bits (59), Expect = 8.9
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = -3
Query: 494 KYFSIDKVFRNETLDATHLAEFHQVEGVVA----DRGLGLA-DLITVLDAFFKRLGFDQL 330
+ + + ++FRNE +D TH EF E +A + + L DL++ + K G ++
Sbjct: 293 RVYEVGRLFRNEGIDLTHNPEFTTCEFYMAYADYEDVIQLTEDLLSSMVMSIK--GTYKI 350
Query: 329 QFKPAYNPYTEPSMEI 282
++ P P TEP E+
Sbjct: 351 EYHP-NGPNTEPVYEV 365
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,356,892
Number of Sequences: 27780
Number of extensions: 308124
Number of successful extensions: 980
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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