Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_M12
         (841 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    36   1.3  
UniRef50_UPI000150A21A Cluster: Eukaryotic aspartyl protease fam...    35   2.9  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 35.9 bits (79), Expect = 1.3
 Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = -3

Query: 686 THALR*K*---AWWXYLPVRTHKRSYHQ*KKKY 597
           THA R +    A W YLP RTHKRSYH+ +  Y
Sbjct: 558 THAFRRRLGSRAEWWYLPARTHKRSYHRYQCSY 590


>UniRef50_UPI000150A21A Cluster: Eukaryotic aspartyl protease family
           protein; n=1; Tetrahymena thermophila SB210|Rep:
           Eukaryotic aspartyl protease family protein -
           Tetrahymena thermophila SB210
          Length = 572

 Score = 34.7 bits (76), Expect = 2.9
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -1

Query: 517 TADDFDAYSIVKCKNNCS--LNLEHKLRSKF*TVIILVSCQFDNYRKQMDNGNNQLTSGI 344
           T     A+   +C++NC   LN ++ L      + +    QFDN+R Q  NG NQ T G+
Sbjct: 95  TGSSLLAFPCSQCESNCGNHLNKQYNLTQSLTALKMSCGAQFDNFRCQNCNG-NQCTWGV 153

Query: 343 N 341
           +
Sbjct: 154 S 154


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 718,791,319
Number of Sequences: 1657284
Number of extensions: 13278036
Number of successful extensions: 24323
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24316
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 73373641369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)