Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_M12
         (841 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13308| Best HMM Match : MFS_1 (HMM E-Value=0.0008)                  30   2.7  
SB_51094| Best HMM Match : VWA (HMM E-Value=0)                         29   6.2  
SB_31773| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_13308| Best HMM Match : MFS_1 (HMM E-Value=0.0008)
          Length = 700

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 235 FLGRKSAINWNFFFTRLTDIERTGNVAVIGILVKLR 342
           F G  SA+++ F F  LTD+    +  VI +++ LR
Sbjct: 497 FAGGLSAVHYTFIFWYLTDLSPEDSAMVIAVVIVLR 532


>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3544

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +3

Query: 315 GDRYFSQITFMPLVN*LFPLSICFR*LSNWQLTRIITVQNLLLNLCSKFKLQLFLHLTIL 494
           G+   +++   P ++ +F LS      S    T    +QN +L + SKF +  F +  IL
Sbjct: 777 GEMIMNRVVHFPQIDIVFVLSAS----SMKSSTTFSLMQNCILKIGSKFGVYTFHYSVIL 832

Query: 495 YASKS 509
           Y S S
Sbjct: 833 YGSSS 837


>SB_31773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 874

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 36  PQYITNICLEMYEHDHFNYYFLRNYELQRRL 128
           P+Y+T++C+ M  + H    F+R Y+   R+
Sbjct: 682 PRYVTSVCVVMCRYVHNVSVFMRRYDTSVRV 712


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,268,722
Number of Sequences: 59808
Number of extensions: 421810
Number of successful extensions: 746
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)