BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_T7_M12 (841 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_13308| Best HMM Match : MFS_1 (HMM E-Value=0.0008) 30 2.7 SB_51094| Best HMM Match : VWA (HMM E-Value=0) 29 6.2 SB_31773| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2 >SB_13308| Best HMM Match : MFS_1 (HMM E-Value=0.0008) Length = 700 Score = 29.9 bits (64), Expect = 2.7 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = +1 Query: 235 FLGRKSAINWNFFFTRLTDIERTGNVAVIGILVKLR 342 F G SA+++ F F LTD+ + VI +++ LR Sbjct: 497 FAGGLSAVHYTFIFWYLTDLSPEDSAMVIAVVIVLR 532 >SB_51094| Best HMM Match : VWA (HMM E-Value=0) Length = 3544 Score = 28.7 bits (61), Expect = 6.2 Identities = 19/65 (29%), Positives = 31/65 (47%) Frame = +3 Query: 315 GDRYFSQITFMPLVN*LFPLSICFR*LSNWQLTRIITVQNLLLNLCSKFKLQLFLHLTIL 494 G+ +++ P ++ +F LS S T +QN +L + SKF + F + IL Sbjct: 777 GEMIMNRVVHFPQIDIVFVLSAS----SMKSSTTFSLMQNCILKIGSKFGVYTFHYSVIL 832 Query: 495 YASKS 509 Y S S Sbjct: 833 YGSSS 837 >SB_31773| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 874 Score = 28.3 bits (60), Expect = 8.2 Identities = 10/31 (32%), Positives = 19/31 (61%) Frame = +3 Query: 36 PQYITNICLEMYEHDHFNYYFLRNYELQRRL 128 P+Y+T++C+ M + H F+R Y+ R+ Sbjct: 682 PRYVTSVCVVMCRYVHNVSVFMRRYDTSVRV 712 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 22,268,722 Number of Sequences: 59808 Number of extensions: 421810 Number of successful extensions: 746 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 663 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 744 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2371447782 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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