Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_M12
         (841 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U52002-8|AAU05577.1|  842|Caenorhabditis elegans Human dice1 (de...    29   5.4  
U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical pr...    28   9.5  
U52002-9|AAB37727.2|  839|Caenorhabditis elegans Human dice1 (de...    28   9.5  

>U52002-8|AAU05577.1|  842|Caenorhabditis elegans Human dice1
           (deleted in cancer)homolog protein 1, isoform b protein.
          Length = 842

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = -3

Query: 335 LTKIPITATFPVRSISVNLVKKKFQLIADFRP 240
           L  I  TA  P+ S  VNLVK KF+ + D RP
Sbjct: 244 LPAIHFTAA-PITSDEVNLVKMKFKKVIDKRP 274


>U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical protein
            C32E12.4 protein.
          Length = 1553

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 403  QFDNYRKQMDNGNNQLTSGI 344
            Q D  RKQM +G+NQL S I
Sbjct: 1146 QMDEIRKQMKSGSNQLQSAI 1165


>U52002-9|AAB37727.2|  839|Caenorhabditis elegans Human dice1
           (deleted in cancer)homolog protein 1, isoform a protein.
          Length = 839

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 305 PVRSISVNLVKKKFQLIADFRP 240
           P+ S  VNLVK KF+ + D RP
Sbjct: 250 PITSDEVNLVKMKFKKVIDKRP 271


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,114,816
Number of Sequences: 27780
Number of extensions: 335505
Number of successful extensions: 653
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)