Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_M09
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    27   2.3  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.4  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    26   7.1  
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3...    25   9.4  
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    25   9.4  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    25   9.4  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    25   9.4  

>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 329 YHLEQFLRALPMEHAVQNTEGPEVPPQTQ 415
           Y LEQ L+  P+EH +  TE  + PP+ +
Sbjct: 86  YGLEQQLKTNPLEHPILITEPFDNPPENR 114


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 398 VPPQTQRLQAIRENGVIDNPNGS 466
           VPP +   + +R+ GVID+PN S
Sbjct: 6   VPPPSYE-EVLRQEGVIDSPNSS 27


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 154 EEGHSVRETPWRGAHSIAGWYVAKKTSGNALWMTAVAP 267
           +E H V ETP+RG H      V    SGNA  ++A+ P
Sbjct: 517 KESH-VNETPYRGLHD-----VNLPASGNASSVSAIPP 548


>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 175

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 30/113 (26%), Positives = 41/113 (36%)
 Frame = -2

Query: 586 TPGQRLLLYKAQVRPRVEYCSHLWAGAPKYQLLPFDSIQKRAVRIVDNPILTDRLEPLGL 407
           TPG        QV    E  +       K   L F   +K     VD   + D LEP  L
Sbjct: 16  TPGTGKTTLAEQVAETTELENICIGDVVKENHLHFGFDEKWKTYDVDEDKVLDYLEPKLL 75

Query: 406 RRDFGSLCILYRMFHGECSEELFEMIPTSRFYHRTARHRSRVHPYYLEPLRSS 248
           +      CI+     G  SEEL +++   R  H     R     Y LE ++ +
Sbjct: 76  KGG----CIIDWHTCGLFSEELIDLVVVLRTDHSKLWERLESRGYSLEKIQEN 124


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 575 LSRRKVPLRSVEDSQHFGRQLGFAFQM 655
           LS  + P+    DSQ+ G  +GFAF +
Sbjct: 198 LSLHRYPVNESGDSQYQGALVGFAFNL 224


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 231 LWKRTVDDRSGSR*YG*TLLRWRAVRW 311
           +WK  V+DRSG +  G T   W+   W
Sbjct: 558 VWKLLVNDRSGGKHEG-TFENWQLALW 583


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = -3

Query: 627 PKCWESSTERSGTLRLDKDFCSIKHKSGLAWSTAPISGPGLPNTSFFHLTPYRREP 460
           P  + S +++       KD+ + + +S  + S +PIS     N S    + +RR P
Sbjct: 113 PSFYRSGSQKRARNLTTKDYFAKRSESSSSASVSPISPSANRNDSKRQASSFRRSP 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,680,951
Number of Sequences: 5004
Number of extensions: 84173
Number of successful extensions: 257
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)