Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_M09
         (794 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59530.1 68418.m07460 2-oxoglutarate-dependent dioxygenase, p...    32   0.50 
At3g16200.1 68416.m02045 expressed protein                             31   1.2  
At2g46510.1 68415.m05796 basic helix-loop-helix (bHLH) family pr...    30   2.0  
At5g43440.1 68418.m05311 2-oxoglutarate-dependent dioxygenase, p...    29   3.6  
At1g76320.1 68414.m08866 far-red impaired responsive protein, pu...    29   3.6  
At4g06744.1 68417.m01106 leucine-rich repeat family protein / ex...    28   6.2  
At5g13080.1 68418.m01499 WRKY family transcription factor WRKY D...    28   8.2  
At3g53590.1 68416.m05919 leucine-rich repeat transmembrane prote...    28   8.2  

>At5g59530.1 68418.m07460 2-oxoglutarate-dependent dioxygenase,
           putative similar to 2A6 (GI:599622) and tomato ethylene
           synthesis regulatory protein E8 (SP|P10967);
           1-aminocyclopropane-1-carboxylate oxidase kidney bean,
           PIR:T10818
          Length = 364

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +2

Query: 275 WMNSTPVAGGAMVKTRRWYHLEQFLRALPMEHAV-QNTEGPEVPPQTQRLQAIRENGVID 451
           W++ +P+ G  +V    +  L    + + +EH V  NT GP +   +    +IREN  + 
Sbjct: 262 WVDVSPLPGALVVNVGDFLQLITNDKFISVEHRVLANTRGPRISVASFFSSSIRENSTVY 321

Query: 452 NPNGSLL 472
            P   L+
Sbjct: 322 GPMKELV 328


>At3g16200.1 68416.m02045 expressed protein
          Length = 452

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +3

Query: 294 WRAVRW*KRDVGIISNNSSEHSPWNMRYKIQRDPKSLRRPRGSKRSVRMG 443
           W   RW K D+ I S     HS W +R  +   P     PR  ++ +R G
Sbjct: 173 WFMARWLKPDMMIESGAFKGHSTWVLRQAMPDTPMISLTPRHPEKYLRKG 222


>At2g46510.1 68415.m05796 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 566

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 623 FGRQLGFAFQMTPKLDIARNVDSKYPDTPGSLQGYS 730
           FG+ L  A     KL++ RN+D ++  TP S +GY+
Sbjct: 263 FGQDLSGAHAYPKKLEVRRNLDERF--TPQSWEGYN 296


>At5g43440.1 68418.m05311 2-oxoglutarate-dependent dioxygenase,
           putative similar to 2A6 (GI:599622) and tomato ethylene
           synthesis regulatory protein E8 (SP|P10967)
          Length = 365

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +2

Query: 275 WMNSTPVAGGAMVKTRRWYHLEQFLRALPMEHAVQ-NTEGPEVPPQTQRLQAIRENGVID 451
           W++ TPV G  ++    +  L    + L MEH V+ N +GP +         +  N  + 
Sbjct: 263 WVDVTPVPGALVISIGDFMQLITNDKFLSMEHRVRANRDGPRISVACFVSSGVFPNSTVY 322

Query: 452 NPNGSLL 472
            P   LL
Sbjct: 323 GPIKELL 329


>At1g76320.1 68414.m08866 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
           contains Pfam:PF03101 domain: FAR1 family
          Length = 732

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 662 SESFGRQSQVGVQNAGSPQQSEAVL 588
           SE+ G  SQ G Q+   P+QS+AVL
Sbjct: 673 SETVGEGSQEGFQHVADPRQSQAVL 697


>At4g06744.1 68417.m01106 leucine-rich repeat family protein /
           extensin family protein similar to leucine-rich
           repeat/extensin 1 (GI:13809918) {Arabidopsis thaliana};
           contains Pfam PF00560: Leucine Rich Repeat domains
          Length = 404

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -2

Query: 589 FTPGQRLLLYKAQ--VRPRVEYCSHLW 515
           F PGQR +   A+  V+P+  YC H+W
Sbjct: 350 FFPGQRSMQECAEFFVKPKKYYCPHMW 376


>At5g13080.1 68418.m01499 WRKY family transcription factor WRKY DNA
           binding protein - Solanum tuberosum, EMBL:AJ278507
          Length = 145

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +2

Query: 515 PEMGAVLHARPDLCFIEQKSLSRRKVPL-RSVEDSQHFGRQLGFAFQMTPKLDI 673
           P +    H++P+L   E++S   R     +SVE S+  G++  +AFQ   ++DI
Sbjct: 12  PFLSLKSHSKPELHQGEEESSKVRSEGCSKSVESSKKKGKKQRYAFQTRSQVDI 65


>At3g53590.1 68416.m05919 leucine-rich repeat transmembrane protein
           kinase, putative CLV1 receptor kinase, Arabidopsis
           thaliana, EMBL:ATU96879
          Length = 783

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -3

Query: 606 TERSGTLRLDKDFCSIKHKSGLAWSTAPIS-GPGLPNTSFFHLTPYRREPFGLSIT 442
           ++ +G LR   +  ++K   G+   TAP+S    L + SFF  TPY    F   IT
Sbjct: 249 SDATGNLRTPDN--NVKVSPGICLCTAPLSIDYRLKSPSFFFFTPYIERQFREYIT 302


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,913,242
Number of Sequences: 28952
Number of extensions: 470474
Number of successful extensions: 1464
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1464
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)