BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_T7_M08 (808 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 249 3e-67 SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 245 7e-66 SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 89 5e-19 SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 52 1e-07 SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.25 SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 28 1.8 SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 27 2.4 SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.5 SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 7.2 SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 9.6 SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 9.6 >SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr 2|||Manual Length = 455 Score = 249 bits (610), Expect = 3e-67 Identities = 113/162 (69%), Positives = 129/162 (79%) Frame = -1 Query: 667 AEKXYHEQLSVAEITNAXXEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKT 488 A K +HE SV EITN EP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ +IK+ Sbjct: 282 AAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKS 341 Query: 487 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDL 308 +RTIQFVDWCPTGFK+GI Y+PP VPG +AKV RAVCMLSNTT+IAEAW+RLDHKFDL Sbjct: 342 RRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDL 401 Query: 307 MYAKRAFVHWYVXXXXXXXXXXXXXEDLAALEKDYEEVGMDS 182 MY+KRAFVHWYV EDLAALE+DYEEVG DS Sbjct: 402 MYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 443 >SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosaccharomyces pombe|chr 2|||Manual Length = 449 Score = 245 bits (599), Expect = 7e-66 Identities = 112/162 (69%), Positives = 127/162 (78%) Frame = -1 Query: 667 AEKXYHEQLSVAEITNAXXEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKT 488 A K +HE SV EITN EP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ TIK Sbjct: 278 AAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKA 337 Query: 487 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDL 308 KRTIQFVDWCPTGFK+GI +PP + G ++AKV RAVCMLSNTT+IAEAW+RLDHKFDL Sbjct: 338 KRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDL 397 Query: 307 MYAKRAFVHWYVXXXXXXXXXXXXXEDLAALEKDYEEVGMDS 182 MY+KRAFVHWYV EDLAALE+DYEEVG DS Sbjct: 398 MYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 439 >SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces pombe|chr 2|||Manual Length = 448 Score = 89.4 bits (212), Expect = 5e-19 Identities = 49/158 (31%), Positives = 79/158 (50%), Gaps = 3/158 (1%) Frame = -1 Query: 649 EQLSVAEITNAXXEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQF 470 + +SV E+T + N MV DPRHG+Y+ L+RG V K+V+ I +++TK + F Sbjct: 282 QAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYF 341 Query: 469 VDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRA 290 V+W P + PP DL + + + N+T+I E + RL +F M+ ++A Sbjct: 342 VEWIPDNVLKAVCSVPPK-----DL---KMSATFIGNSTSIQEIFRRLGDQFSAMFRRKA 393 Query: 289 FVHWYV---XXXXXXXXXXXXXEDLAALEKDYEEVGMD 185 F+HWY DL + + Y+E G+D Sbjct: 394 FLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGID 431 >SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr 2|||Manual Length = 446 Score = 51.6 bits (118), Expect = 1e-07 Identities = 29/123 (23%), Positives = 62/123 (50%), Gaps = 1/123 (0%) Frame = -1 Query: 640 SVAEITNAXXEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 464 +V ++ P NQMV +P + +++ + +G+ P DV+ ++ I+ +R F+ Sbjct: 291 TVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIP 350 Query: 463 WCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFV 284 W P +V ++ + P + ++ + ML+N T+IA + R ++D + + AF+ Sbjct: 351 WGPASIQVALSKKSPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQYDRLRKRNAFL 405 Query: 283 HWY 275 Y Sbjct: 406 EQY 408 >SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 857 Score = 30.7 bits (66), Expect = 0.25 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = -2 Query: 540 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 406 VV P + RP++P P LS V PV+ V + PP P Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596 >SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1|||Manual Length = 3227 Score = 27.9 bits (59), Expect = 1.8 Identities = 14/48 (29%), Positives = 23/48 (47%) Frame = +2 Query: 500 SDGRVHILGYDVTTVQHTASHVLAMTGVAFHHLVGGLXXCVCDLGDGK 643 S G +LGY ++ A++V+A + V HL+ G D + K Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK 454 >SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 709 Score = 27.5 bits (58), Expect = 2.4 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 2/66 (3%) Frame = -2 Query: 336 GLALTTSSTSCTPSVLSCTGTSVRVWRRESXPKPVRTWLPS--RRITKKSAWTPLKARVR 163 G+ TS TS T S S++ S P P W P+ S+ TP+ V Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207 Query: 162 EPKSTK 145 EP+ TK Sbjct: 208 EPRFTK 213 >SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr 1|||Manual Length = 628 Score = 26.2 bits (55), Expect = 5.5 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%) Frame = -2 Query: 504 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 418 +LP KPS+ +++S V+P S STTS+P Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36 >SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosaccharomyces pombe|chr 1|||Manual Length = 157 Score = 25.8 bits (54), Expect = 7.2 Identities = 10/20 (50%), Positives = 11/20 (55%) Frame = +1 Query: 523 WVRRHHGTAYSKPCTCHDGG 582 W R H Y+KPC DGG Sbjct: 16 WRRDHPFGFYAKPCKSSDGG 35 >SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces pombe|chr 1|||Manual Length = 665 Score = 25.4 bits (53), Expect = 9.6 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Frame = -2 Query: 507 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 412 P PS+P+++SN ST G+Q V V + W Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564 >SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 800 Score = 25.4 bits (53), Expect = 9.6 Identities = 17/56 (30%), Positives = 23/56 (41%) Frame = -2 Query: 585 ATPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHP 418 +TPV ++ CT TS P T + S P +N +T S TS P Sbjct: 437 STPVTSTPLATTNCTTSTSVPY--TSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTP 490 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,561,717 Number of Sequences: 5004 Number of extensions: 49229 Number of successful extensions: 168 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 149 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 167 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 392429240 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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