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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_M08
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   249   3e-67
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   245   7e-66
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    89   5e-19
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    52   1e-07
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    31   0.25 
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    28   1.8  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    27   2.4  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.5  
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch...    26   7.2  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    25   9.6  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   9.6  

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  249 bits (610), Expect = 3e-67
 Identities = 113/162 (69%), Positives = 129/162 (79%)
 Frame = -1

Query: 667 AEKXYHEQLSVAEITNAXXEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKT 488
           A K +HE  SV EITN   EP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ +IK+
Sbjct: 282 AAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKS 341

Query: 487 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDL 308
           +RTIQFVDWCPTGFK+GI Y+PP  VPG  +AKV RAVCMLSNTT+IAEAW+RLDHKFDL
Sbjct: 342 RRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDL 401

Query: 307 MYAKRAFVHWYVXXXXXXXXXXXXXEDLAALEKDYEEVGMDS 182
           MY+KRAFVHWYV             EDLAALE+DYEEVG DS
Sbjct: 402 MYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 443


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  245 bits (599), Expect = 7e-66
 Identities = 112/162 (69%), Positives = 127/162 (78%)
 Frame = -1

Query: 667 AEKXYHEQLSVAEITNAXXEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKT 488
           A K +HE  SV EITN   EP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ TIK 
Sbjct: 278 AAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKA 337

Query: 487 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDL 308
           KRTIQFVDWCPTGFK+GI  +PP  + G ++AKV RAVCMLSNTT+IAEAW+RLDHKFDL
Sbjct: 338 KRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDL 397

Query: 307 MYAKRAFVHWYVXXXXXXXXXXXXXEDLAALEKDYEEVGMDS 182
           MY+KRAFVHWYV             EDLAALE+DYEEVG DS
Sbjct: 398 MYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 439


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 89.4 bits (212), Expect = 5e-19
 Identities = 49/158 (31%), Positives = 79/158 (50%), Gaps = 3/158 (1%)
 Frame = -1

Query: 649 EQLSVAEITNAXXEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQF 470
           + +SV E+T    +  N MV  DPRHG+Y+    L+RG V  K+V+  I +++TK +  F
Sbjct: 282 QAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYF 341

Query: 469 VDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRA 290
           V+W P      +   PP      DL   + +   + N+T+I E + RL  +F  M+ ++A
Sbjct: 342 VEWIPDNVLKAVCSVPPK-----DL---KMSATFIGNSTSIQEIFRRLGDQFSAMFRRKA 393

Query: 289 FVHWYV---XXXXXXXXXXXXXEDLAALEKDYEEVGMD 185
           F+HWY                  DL +  + Y+E G+D
Sbjct: 394 FLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGID 431


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 29/123 (23%), Positives = 62/123 (50%), Gaps = 1/123 (0%)
 Frame = -1

Query: 640 SVAEITNAXXEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 464
           +V ++      P NQMV  +P +   +++   + +G+  P DV+ ++  I+ +R   F+ 
Sbjct: 291 TVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIP 350

Query: 463 WCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFV 284
           W P   +V ++ + P +     ++ +     ML+N T+IA  + R   ++D +  + AF+
Sbjct: 351 WGPASIQVALSKKSPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQYDRLRKRNAFL 405

Query: 283 HWY 275
             Y
Sbjct: 406 EQY 408


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -2

Query: 540 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 406
           VV   P +  RP++P  P  LS     V PV+  V +   PP  P
Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +2

Query: 500 SDGRVHILGYDVTTVQHTASHVLAMTGVAFHHLVGGLXXCVCDLGDGK 643
           S G   +LGY ++     A++V+A + V   HL+ G      D  + K
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK 454


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = -2

Query: 336 GLALTTSSTSCTPSVLSCTGTSVRVWRRESXPKPVRTWLPS--RRITKKSAWTPLKARVR 163
           G+   TS TS T S       S++     S P P   W P+        S+ TP+   V 
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207

Query: 162 EPKSTK 145
           EP+ TK
Sbjct: 208 EPRFTK 213


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = -2

Query: 504 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 418
           +LP KPS+   +++S   V+P S   STTS+P
Sbjct: 5   TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36


>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
           Hus5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 523 WVRRHHGTAYSKPCTCHDGG 582
           W R H    Y+KPC   DGG
Sbjct: 16  WRRDHPFGFYAKPCKSSDGG 35


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -2

Query: 507 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 412
           P  PS+P+++SN ST  G+Q V   V   +   W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = -2

Query: 585 ATPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHP 418
           +TPV ++      CT  TS P   T   + S P   +N +T       S   TS P
Sbjct: 437 STPVTSTPLATTNCTTSTSVPY--TSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTP 490


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,561,717
Number of Sequences: 5004
Number of extensions: 49229
Number of successful extensions: 168
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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