Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_M06
         (856 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyce...   113   3e-26
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    50   3e-07
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    28   1.9  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    27   3.4  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    27   4.5  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    26   5.9  
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi...    26   5.9  
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...    26   5.9  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    26   7.8  
SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa...    26   7.8  

>SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 176

 Score =  113 bits (272), Expect = 3e-26
 Identities = 64/175 (36%), Positives = 96/175 (54%), Gaps = 4/175 (2%)
 Frame = -1

Query: 610 LLTFIRAAESDPSLVSLALGQDLTALGLNLNSPDN---LNLTFAGPWADTPCR-PQDMDY 443
           LL  IR  +S+ S  +L LG DL ALG +L   +    ++     PWA+   + P     
Sbjct: 5   LLPIIRMEDSEMS--TLQLGCDLAALGFDLAPVEEDRLISTNLFSPWAELNTKKPVSQPM 62

Query: 442 HVPPEYLINGSIREKLAPLRLGRYKEDLLFYLFYCFVGDVLQIAAAAELYNREWRYHMEE 263
              P    N  +    A  ++ ++ ++ LFY+FY    DV+Q AAA EL NR WR+H E 
Sbjct: 63  FKLPACYKN--VNPPPAISKIFQFSDETLFYIFYTMPRDVMQEAAAQELTNRNWRFHKEL 120

Query: 262 KVWISQAPGMPMVEKTSTYERGTYYFFDAHNWRKVPKEFHLDYSKLEGRPQLPPH 98
           +VW++  PGM  +++T  +ERG Y FFD  +W+++ K+F L Y+ LE R Q   H
Sbjct: 121 RVWLTPVPGMKPLQRTPQFERGYYMFFDPIHWKRIKKDFLLMYAALEDRAQSAVH 175


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
 Frame = -1

Query: 364 DLLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYF 185
           D LFY+FY   G   Q  A  EL  + WR+H +   W  +     M+  T  +E G+Y +
Sbjct: 543 DTLFYMFYYRPGTYQQYIAGQELKKQSWRFHKKYTTWFQRHEEPKMI--TDEFESGSYRY 600

Query: 184 FDAH-NW-RKVPKEFHLDYSKLE 122
           FD   +W ++   +F   Y  LE
Sbjct: 601 FDFEGDWVQRKKADFRFTYQYLE 623


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 223 EKTSTYERGTYYFFDAHNWRKVPKEFHLDYSKLEGR 116
           E    YE    Y++  HN RK+   FHL   +++ R
Sbjct: 553 ELVPLYEGFQNYYYSCHNGRKLSWLFHLSKGEIKAR 588


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 351 ICSTVSLVTFYKLRLQQSYTIANGDIIWRRRCGSHK 244
           I  +V+L   +  RL Q+YT  N  ++     G HK
Sbjct: 298 ILLSVALFALFSSRLSQAYTFTNNALLCCHELGLHK 333


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = -2

Query: 291 IANGDIIWRRRCGSH---KRPACQWS-RRLQRTNAAPTTSSMRTIGERCRK 151
           +A+ D+IW R C  H   K   C W    L+R       +S++   ER  K
Sbjct: 143 LADDDVIWHRMCEQHINRKCEKCGWGLPLLERNTLYAAKASIQKRYERLTK 193


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 16/64 (25%), Positives = 25/64 (39%)
 Frame = -1

Query: 310 AAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFFDAHNWRKVPKEFHLDYS 131
           A+    N   RY    ++WI Q   +P  +  +  +       D   W+K    F +DY 
Sbjct: 2   ASTATQNASTRY---SQIWIDQPASLPFQDSINLIKE------DKEKWKKEKTAFLIDYD 52

Query: 130 KLEG 119
             EG
Sbjct: 53  WFEG 56


>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
           Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -1

Query: 682 QTSPEGKVTNIPDTMIPNQFGIVGLLTFIRAAESDPSLVS 563
           + +PE +V  I + M  N+ G + L  F   ++ DP++VS
Sbjct: 142 EDTPEKRVNKIFNMMDKNKDGQLTLEEFCEGSKRDPTIVS 181


>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 481 WADTPCRPQDMDYHVPPEYLINGSIREKLAPLRLGRYKED 362
           WAD P  P D  + +   Y  +G +  K   L  G Y++D
Sbjct: 40  WADVPMGPPDPIFGITEAYKKDGDV--KKMNLGAGTYRDD 77


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -1

Query: 352  YLFYCFVGDVLQIAAAAELYNREWRY 275
            +L  CFV D  Q A AAEL    W Y
Sbjct: 1382 FLKRCFVSDPNQRATAAELLMDPWVY 1407


>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
           Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -2

Query: 390 LYDSEDIKKIYYSICSTVSLVTFYKLRLQQSYTIANGD 277
           L+  + + + Y+S+  TVSL+  +K+R  Q  TI  G+
Sbjct: 81  LFMGDYVDRGYHSV-ETVSLLIAFKIRYPQRITILRGN 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,895,198
Number of Sequences: 5004
Number of extensions: 61275
Number of successful extensions: 179
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)